Analysis pipelines from Oxford Nanopore Technologies' Research Division
☆48Oct 16, 2020Updated 6 years ago
Alternatives and similar repositories for katuali
Users that are interested in katuali are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis components from Oxford Nanopore Research☆99Jul 1, 2026Updated 4 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Dec 8, 2020Updated 5 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Feb 2, 2022Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Dec 8, 2020Updated 5 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- LoRTIA toolkit alpha version☆10Aug 19, 2019Updated 7 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆110Feb 7, 2023Updated 3 years ago
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated 2 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- PEPPER-Margin-DeepVariant☆260Jan 12, 2024Updated 2 years ago
- Data and analysis for NA12878 genome on nanopore☆413Nov 22, 2022Updated 3 years ago
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 5 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆63Feb 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆85Mar 3, 2025Updated last year
- Fast5 API provided by ONT Research☆21Mar 17, 2022Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- Research release basecalling models and configurations☆121Sep 7, 2026Updated last month
- ✏️ Genome assembly polishing & SNV detection☆74Sep 10, 2026Updated last month
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 6 years ago
- Structural Variant Identification Method using Long Reads☆189Jun 29, 2021Updated 5 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- ☆31Feb 5, 2021Updated 5 years ago