alexfields / ORF-RATERLinks
Regression-based annotation of protein-coding sequences from ribosome profiling data
☆32Updated 5 years ago
Alternatives and similar repositories for ORF-RATER
Users that are interested in ORF-RATER are comparing it to the libraries listed below
Sorting:
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 weeks ago
- ☆49Updated 3 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆79Updated 3 weeks ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 3 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 9 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆87Updated 2 weeks ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 3 months ago
- A continually expanding collection of RNA-seq tools☆52Updated last month
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆147Updated last year
- ☆62Updated 5 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated 3 months ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆29Updated 11 months ago
- ☆41Updated this week
- Extract data quickly from Juicebox via straw☆69Updated 7 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆31Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- ☆15Updated 3 years ago
- RiboPlotR package for Ribo-plot☆15Updated 5 months ago
- A list of alternative splicing analysis resources☆46Updated 7 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago