alexfields / ORF-RATERLinks
Regression-based annotation of protein-coding sequences from ribosome profiling data
☆32Updated 5 years ago
Alternatives and similar repositories for ORF-RATER
Users that are interested in ORF-RATER are comparing it to the libraries listed below
Sorting:
- ☆49Updated 3 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 2 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- A list of alternative splicing analysis resources☆46Updated 9 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 10 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 5 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆32Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 10 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆80Updated last week
- ☆15Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- ☆68Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆74Updated last week
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆89Updated last month
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Notes on ChIP-seq and other-seq-related tools☆26Updated 5 months ago
- A continually expanding collection of RNA-seq tools☆53Updated 2 months ago
- ☆62Updated 5 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆29Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- Links to ATAC-seq analysis tools☆74Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago