alexfields / ORF-RATERLinks
Regression-based annotation of protein-coding sequences from ribosome profiling data
☆32Updated 5 years ago
Alternatives and similar repositories for ORF-RATER
Users that are interested in ORF-RATER are comparing it to the libraries listed below
Sorting:
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- ☆48Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆40Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 6 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 2 weeks ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- ☆63Updated 5 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆74Updated this week
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆80Updated last month
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated last month
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆15Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- ☆69Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- A list of alternative splicing analysis resources☆47Updated 10 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆50Updated 5 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 4 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Updated 7 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆83Updated 8 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆32Updated 2 years ago