alexfields / ORF-RATER
Regression-based annotation of protein-coding sequences from ribosome profiling data
☆30Updated 4 years ago
Alternatives and similar repositories for ORF-RATER:
Users that are interested in ORF-RATER are comparing it to the libraries listed below
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- ☆47Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆27Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 6 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 9 months ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- A list of alternative splicing analysis resources☆41Updated 2 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- A continually expanding collection of RNA-seq tools☆47Updated 3 months ago
- Notes on ChIP-seq and other-seq-related tools☆23Updated 2 weeks ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆16Updated 2 weeks ago
- Estimation of Promoter Activity from RNA-Seq data☆50Updated 3 years ago
- New version of JACUSA -> 2.0☆23Updated this week
- ☆53Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 5 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- RiboPlotR package for Ribo-plot☆14Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆35Updated 9 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆75Updated last month
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆56Updated last month
- Demultiplexes a fastq.☆44Updated 4 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago