Regression-based annotation of protein-coding sequences from ribosome profiling data
☆32Jul 29, 2020Updated 6 years ago
Alternatives and similar repositories for ORF-RATER
Users that are interested in ORF-RATER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis,…☆12May 16, 2023Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆64Feb 24, 2025Updated last year
- ☆14Mar 18, 2016Updated 10 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- ☆10Jan 15, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 11 months ago
- ☆17Feb 16, 2024Updated 2 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 10 years ago
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆54Oct 21, 2025Updated 11 months ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)☆13Jul 30, 2019Updated 7 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genome-wide assessment of differential translations with ribosome profiling data☆23May 6, 2025Updated last year
- An attempt to help anyone interested in using Perl for Bioinformatics☆36Dec 4, 2019Updated 6 years ago
- ☆12Sep 10, 2026Updated 3 weeks ago
- lncRNA-screen☆25Apr 19, 2017Updated 9 years ago
- Analysis and Visualization of Ribosome Profiling Data☆32Aug 29, 2025Updated last year
- A suite of regression-based tools for ribosome profiling data analysis☆10Sep 23, 2026Updated 2 weeks ago
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 5 years ago
- Position-wise analysis of sequencing and genomics data☆41Jul 6, 2023Updated 3 years ago
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- ☆17Jul 29, 2021Updated 5 years ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 8 months ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆19Jul 19, 2025Updated last year
- Protein sequence domain annotation with a language model☆36Aug 19, 2026Updated last month
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 9 years ago
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- ☆30Sep 9, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- release version☆62Jul 29, 2022Updated 4 years ago
- ☆23Jun 5, 2021Updated 5 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆21Dec 20, 2023Updated 2 years ago
- ☆74Aug 19, 2023Updated 3 years ago
- ☆41Oct 25, 2018Updated 7 years ago
- ☆17Feb 27, 2023Updated 3 years ago