Alternatives and similar repositories for scikit-ribo:

Users that are interested in scikit-ribo are comparing it to the libraries listed below

• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• bioinformatics-core-shared-training / cruk-summer-school-2018
  Summer school course materials collection
  ☆25Updated 6 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 3 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆32Updated 8 months ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated last year
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated 3 weeks ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆19Updated last year
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆33Updated this week
• snystrom / memes
  An R interface to the MEME Suite
  ☆50Updated 6 months ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆16Updated 6 years ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆39Updated 3 weeks ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated 2 months ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆28Updated 5 months ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆25Updated 2 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆28Updated 3 weeks ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆24Updated last year
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• crazyhottommy / scripts-general-use
  ☆16Updated 7 years ago
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆38Updated 3 years ago
• js2264 / tidyCoverage
  ☆21Updated 7 months ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 9 months ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago