Accurate estimation and robust modelling of translation dynamics at codon resolution
☆22Jun 27, 2017Updated 8 years ago
Alternatives and similar repositories for scikit-ribo
Users that are interested in scikit-ribo are comparing it to the libraries listed below
Sorting:
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- Scripts and instructions to apply RiboTIE on Ribo-seq data☆19Jul 22, 2025Updated 7 months ago
- CLIP Tool Kit (CTK)☆21Apr 28, 2024Updated last year
- Genome-wide assessment of differential translations with ribosome profiling data☆21May 6, 2025Updated 9 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Jul 19, 2025Updated 7 months ago
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 4 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24May 30, 2023Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Feb 24, 2025Updated last year
- ☆23Jun 7, 2024Updated last year
- GSCALite: Gene set for cancer analysis☆23May 25, 2022Updated 3 years ago
- release version☆58Jul 29, 2022Updated 3 years ago
- ✅ PeopleBudget is an open-source tool for hosting participatory budgets elections at the local level.☆10Oct 4, 2022Updated 3 years ago
- Pyranges: a Python framework for ultrafast sequence interval operations☆45Updated this week
- ☆12Oct 29, 2025Updated 4 months ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Jul 29, 2020Updated 5 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- UTK Bioinformatics Applications☆11Nov 9, 2018Updated 7 years ago
- A comprehensive pipeline for Ribo-seq data analysis☆11Jun 27, 2025Updated 8 months ago
- ☆39Jul 3, 2025Updated 7 months ago
- ☆40Sep 29, 2022Updated 3 years ago
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆11Mar 3, 2017Updated 8 years ago
- ☆13Sep 22, 2017Updated 8 years ago
- Apache Spark programming exercises with Python☆13Apr 18, 2021Updated 4 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Find Functions and their Dependencies☆13Feb 21, 2022Updated 4 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 4 years ago
- Terminal user interface for a Kanban board☆11Nov 5, 2021Updated 4 years ago
- FOR my learing☆12Feb 19, 2026Updated last week
- ☆38Updated this week
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago