schatzlab / scikit-riboLinks
Accurate estimation and robust modelling of translation dynamics at codon resolution
☆20Updated 8 years ago
Alternatives and similar repositories for scikit-ribo
Users that are interested in scikit-ribo are comparing it to the libraries listed below
Sorting:
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆68Updated this week
- ☆21Updated 11 months ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- interactive plots for differential expression analysis☆34Updated 2 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated 2 months ago
- An interactive web-tool for RNA-seq analysis☆68Updated 6 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- Evolutionary Transcriptomics with R☆45Updated last week
- ☆34Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 2 months ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Merge fastq files split over lanes☆20Updated 7 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- R package for genomic feature analysis and visualization☆79Updated 4 months ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Differential Count Data Analysis Toolbox☆61Updated last year
- ☆16Updated 8 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- ☆32Updated last year
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year