schatzlab / scikit-riboLinks
Accurate estimation and robust modelling of translation dynamics at codon resolution
☆20Updated 8 years ago
Alternatives and similar repositories for scikit-ribo
Users that are interested in scikit-ribo are comparing it to the libraries listed below
Sorting:
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆34Updated 3 weeks ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 weeks ago
- An R interface to the MEME Suite☆52Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- ☆29Updated 5 years ago
- Transcript quantification import with automatic metadata detection☆68Updated last month
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated last month
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- interactive plots for differential expression analysis☆32Updated last month
- An interactive web-tool for RNA-seq analysis☆68Updated 5 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆55Updated 2 months ago
- Differential Count Data Analysis Toolbox☆60Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 4 months ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- R package for genomic feature analysis and visualization☆79Updated 3 months ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- ☆21Updated 11 months ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆16Updated 4 years ago
- ☆29Updated 9 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year