schatzlab / scikit-riboLinks
Accurate estimation and robust modelling of translation dynamics at codon resolution
☆20Updated 8 years ago
Alternatives and similar repositories for scikit-ribo
Users that are interested in scikit-ribo are comparing it to the libraries listed below
Sorting:
- Transcript quantification import with automatic metadata detection☆68Updated 3 weeks ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆21Updated 10 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- An R interface to the MEME Suite☆50Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- ☆33Updated last week
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- Make rapid visualizations of RNA-seq data in R☆19Updated 6 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 4 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated last month
- ☆16Updated 8 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- R package for genomic feature analysis and visualization☆79Updated 3 months ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- Merge fastq files split over lanes☆20Updated 7 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆42Updated last week
- Tools for visualizing genomics data☆69Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- ☆29Updated 5 years ago