schatzlab / scikit-ribo
Accurate estimation and robust modelling of translation dynamics at codon resolution
☆20Updated 7 years ago
Alternatives and similar repositories for scikit-ribo:
Users that are interested in scikit-ribo are comparing it to the libraries listed below
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Documentation for vcfR☆11Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 3 months ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- interactive plots for differential expression analysis☆32Updated last month
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 5 months ago
- ☆21Updated 8 months ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- An R package to process and analyze transcriptomic data☆17Updated 7 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)☆13Updated 4 years ago
- R interface to the JBrowse 2 Linear Genome View.☆37Updated last year
- ☆16Updated 7 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Motif manipulation functions for R.☆28Updated last week
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- ☆26Updated last month
- a set of NGS pipelines☆24Updated this week
- Evolutionary Transcriptomics with R☆43Updated this week
- ☆15Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago