Biochemistry1-FFM / uORF-ToolsLinks
uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
☆13Updated 6 years ago
Alternatives and similar repositories for uORF-Tools
Users that are interested in uORF-Tools are comparing it to the libraries listed below
Sorting:
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated last month
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- A software for calculating telomere length☆73Updated 7 years ago
- Evolutionary Transcriptomics with R☆47Updated this week
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- ☆33Updated 2 months ago
- ☆21Updated last year
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆24Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Gene Fusion Visualiser☆51Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago