Biochemistry1-FFM / uORF-Tools
uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
☆13Updated 5 years ago
Alternatives and similar repositories for uORF-Tools:
Users that are interested in uORF-Tools are comparing it to the libraries listed below
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Long read to rMATS☆31Updated last year
- ☆14Updated 2 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ☆24Updated 2 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated 2 weeks ago
- Evolutionary Transcriptomics with R☆41Updated this week
- HOT regions paper☆11Updated 5 years ago
- ☆23Updated 3 years ago
- ☆15Updated last year
- ☆30Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 6 months ago
- Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores☆8Updated 9 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- ☆21Updated 7 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Time-Course Multi-Omics data integration☆24Updated 9 months ago
- A guide to running MaxQuant in Linux☆32Updated 4 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated 2 months ago