Alternatives and similar repositories for RiboTaper

Users that are interested in RiboTaper are comparing it to the libraries listed below

• xryanglab / RiboCode
  release version
  ☆54Updated 3 years ago
• xuzhougeng / org.Osativa.eg.db
  ☆20Updated 6 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆66Updated last year
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆49Updated 6 years ago
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆90Updated 4 months ago
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆68Updated 4 months ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆60Updated 2 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆55Updated 8 months ago
• a2iEditing / RNAEditingIndexer
  A tool for the calculation of RNA-editing index for RNA seq data
  ☆45Updated 3 weeks ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆61Updated 2 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆120Updated last month
• BSSeeker / BSseeker2
  A versatile aligning pipeline for bisulfite sequencing data
  ☆66Updated 7 years ago
• shenmengyuan / RNA_seq_Biotrainee
  DEG analysis and KEGG/GO enrichment analysis
  ☆69Updated 7 years ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆145Updated 2 months ago
• bioinform / rnacocktail
  ☆89Updated 5 years ago
• guoweilong / cgmaptools
  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
  ☆64Updated last year
• Xinglab / rmats2sashimiplot
  ☆154Updated 6 months ago
• epi2me-labs / wf-transcriptomes
  ☆107Updated last month
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 7 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆128Updated 3 years ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆97Updated this week
• niu-lab / msisensor2
  Microsatellite instability (MSI) detection for tumor only data.
  ☆111Updated last year
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆174Updated 2 weeks ago
• BioinfoUNIBA / REDItools2
  ☆59Updated 4 months ago
• ncbi / TPMCalculator
  TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
  ☆132Updated last year
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆29Updated 2 weeks ago
• MikeAxtell / ShortStack
  ShortStack: Comprehensive annotation and quantification of small RNA genes
  ☆95Updated last month
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated 5 months ago