QuantitativeBiology / PhenPredLinks
☆12Updated last month
Alternatives and similar repositories for PhenPred
Users that are interested in PhenPred are comparing it to the libraries listed below
Sorting:
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆75Updated 3 weeks ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 3 weeks ago
- Computational Optimization of DNA Activity (CODA)☆61Updated 6 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆52Updated 4 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆47Updated this week
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆84Updated last week
- ☆32Updated 8 months ago
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆46Updated 4 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆43Updated last week
- ☆86Updated last month
- ☆42Updated 4 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆49Updated last month
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- ☆24Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated last month
- deep learning-inspired explainable sequence model for transcription initiation☆96Updated 7 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated last week
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆33Updated last month
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆39Updated this week
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 10 months ago
- bioinformatics plotting and tools☆59Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 6 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆79Updated last year
- ☆18Updated last year
- ☆35Updated last week
- Functional Embedding of Gene Signatures☆46Updated last year