QuantitativeBiology / PhenPredLinks
☆13Updated 2 months ago
Alternatives and similar repositories for PhenPred
Users that are interested in PhenPred are comparing it to the libraries listed below
Sorting:
- ☆100Updated 3 months ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)☆67Updated 10 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 7 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆92Updated 2 months ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated 2 weeks ago
- Functional Embedding of Gene Signatures☆48Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆59Updated 8 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆62Updated last week
- ☆38Updated last month
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆53Updated 5 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- a dataloader to work with large single cell datasets from lamindb☆34Updated this week
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59Updated 3 years ago
- repository containing analysis scripts and auxiliary files☆37Updated 5 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆54Updated 3 months ago
- ☆34Updated last year
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Updated 4 months ago
- ☆27Updated 8 months ago
- flexible CDR based distance metrics☆69Updated last month
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Updated 4 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆74Updated last week
- ☆19Updated last year
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆48Updated 4 years ago
- Functional and Learnable Cell dynamicS☆21Updated 8 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 3 weeks ago
- ☆90Updated last year
- Repository for the paper: "SPACE: STRING proteins as complementary embeddings"☆34Updated 2 months ago