marbl / harvestLinks
☆53Updated 4 years ago
Alternatives and similar repositories for harvest
Users that are interested in harvest are comparing it to the libraries listed below
Sorting:
- ☆36Updated 3 years ago
- Visualize whole genome alignments as linear maps☆73Updated this week
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆73Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 5 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Gene-flank analysis tool☆28Updated 7 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- whole genome MLST analysis☆46Updated last month
- all methods related to Enterobase☆43Updated 11 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago