marbl / harvest
☆51Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for harvest
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆52Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- ☆33Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- IS mapping software☆51Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- ☆78Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆50Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 6 months ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 3 years ago
- Microbial Populations as Clusters Of Gene Transfer☆42Updated 11 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆51Updated 2 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆25Updated last month
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- ☆43Updated this week
- Predict plasmids from uncorrected long read data☆39Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆68Updated 4 years ago
- whole genome MLST analysis☆38Updated 5 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago