alexcritschristoph / Qiime16sTutorialView external linksLinks
A tutorial on methods of 16S analysis with QIIME 1
☆71Jul 26, 2019Updated 6 years ago
Alternatives and similar repositories for Qiime16sTutorial
Users that are interested in Qiime16sTutorial are comparing it to the libraries listed below
Sorting:
- ☆20Jan 12, 2017Updated 9 years ago
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 7 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆456Feb 2, 2026Updated last week
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Dec 19, 2022Updated 3 years ago
- Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R☆18May 19, 2017Updated 8 years ago
- bioinformatics for peter☆11Apr 8, 2025Updated 10 months ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- ☆78Dec 4, 2023Updated 2 years ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆638Apr 29, 2024Updated last year
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆33Jun 18, 2023Updated 2 years ago
- Tool to easily install QIIME's dependencies on Linux systems☆33Oct 14, 2015Updated 10 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Feb 3, 2026Updated last week
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 11 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Aug 22, 2025Updated 5 months ago
- ☆21Feb 13, 2020Updated 6 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- ☆42Nov 20, 2017Updated 8 years ago
- A set of R scripts for the analysis of microbial profiles☆41Jan 9, 2026Updated last month
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks☆13Jun 16, 2020Updated 5 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 9 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- ☆10Feb 3, 2022Updated 4 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Tools for visualising microbial community amplicon data☆71Nov 3, 2025Updated 3 months ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- Documentation for PEP specification and all PEPkit software☆10Dec 22, 2025Updated last month
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆13Nov 20, 2025Updated 2 months ago
- Analysis of Composition of Microbiomes☆11Jun 17, 2016Updated 9 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 4 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆376Nov 27, 2025Updated 2 months ago