alexcritschristoph / Qiime16sTutorialLinks
A tutorial on methods of 16S analysis with QIIME 1
☆70Updated 5 years ago
Alternatives and similar repositories for Qiime16sTutorial
Users that are interested in Qiime16sTutorial are comparing it to the libraries listed below
Sorting:
- ☆23Updated 7 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆81Updated 9 years ago
- Rapid and scalable correlation estimation for compositional data☆90Updated last year
- Course material for the metagenomics course☆44Updated 3 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago
- ☆60Updated 5 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- ☆76Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Micro 612 genomics workshop☆37Updated 4 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆89Updated last year
- Metagenomics Workshop☆28Updated 8 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆81Updated 6 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 5 months ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Development version of Easyfig☆98Updated last year