IGBB / quackLinks
A FASTQ quality assessment tool
☆14Updated last month
Alternatives and similar repositories for quack
Users that are interested in quack are comparing it to the libraries listed below
Sorting:
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- A utility for splitting mixed origin NGS reads☆10Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 6 months ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Genomic plot in trellis layout☆41Updated last year
- ☆18Updated 10 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 7 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- ☆18Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 weeks ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Maximum likelihood demultiplexing☆48Updated 9 months ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago