We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools,…
☆13May 22, 2025Updated 10 months ago
Alternatives and similar repositories for HRIBO
Users that are interested in HRIBO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis and Visualization of Ribosome Profiling Data☆31Aug 29, 2025Updated 6 months ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- ☆36Mar 20, 2026Updated last week
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- A list of bioinformatic tools for working with Ribo-Seq data☆20Apr 11, 2024Updated last year
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 7 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- k-mer probability logo☆11Jan 20, 2023Updated 3 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- ☆13Jan 28, 2019Updated 7 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- The tRNA adaptation index☆20Apr 25, 2025Updated 11 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Updated this week
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 8 years ago
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jan 15, 2026Updated 2 months ago
- How research parasites can download your data!☆16Jul 24, 2025Updated 8 months ago
- A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.☆31Updated this week
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- IBD based kinship estimation☆16Mar 3, 2023Updated 3 years ago
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆25Mar 6, 2026Updated 3 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 8 years ago
- 基于appium实现自动刷抖音☆13Dec 20, 2020Updated 5 years ago
- 使用uniapp编写的万年历，日历。可展示农历、假期、调休、黄历、最近假期☆15Apr 2, 2022Updated 3 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆24Aug 7, 2023Updated 2 years ago
- scripts for RNA-Seq analysis☆28Feb 20, 2022Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆60Jun 27, 2025Updated 9 months ago
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.☆20May 10, 2023Updated 2 years ago
- Variant-aware CRISPR off-target nomination☆24Jan 26, 2026Updated 2 months ago
- ☆17Feb 27, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated 2 months ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- ☆13Apr 29, 2023Updated 2 years ago