ailabstw / ezGenoLinks
An open source genomics data analysis package based on deep learning for auto tuning network structure and building models.
☆21Updated 2 years ago
Alternatives and similar repositories for ezGeno
Users that are interested in ezGeno are comparing it to the libraries listed below
Sorting:
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Updated 5 years ago
- ☆51Updated 6 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20Updated 4 years ago
- an open-source pipeline for Affymetrix Axiom genotyping workflow on livestock species☆14Updated 9 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Updated 5 years ago
- ☆26Updated 6 years ago
- Machine learning framework to quantify pathogenicity of structural variants☆12Updated 5 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Updated last year
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆22Updated last year
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Updated 3 years ago
- Repository for the Anczukow-Lab splicing pipeline☆17Updated 10 months ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆30Updated last year
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Updated 10 months ago
- new repo☆28Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- Comprehensive and scalable differential splicing analyses☆18Updated last month
- ☆18Updated last year
- BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data☆26Updated 4 years ago
- Splits fastq files evenly☆23Updated 5 years ago
- Ultra-fast 5' and 3' demultiplexer☆29Updated last year
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- ☆31Updated 4 years ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Updated 2 years ago
- A software package for detection of copy number alterations from tumor samples☆12Updated 10 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆60Updated last year
- alternative splicing analysis pipeline☆20Updated 4 years ago