A package for detecting epistasis by machine learning
☆21Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for GenEpi
Users that are interested in GenEpi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Nov 3, 2021Updated 4 years ago
- An open source genomics data analysis package based on deep learning for auto tuning network structure and building models.☆21Oct 3, 2023Updated 2 years ago
- ☆15Aug 24, 2022Updated 3 years ago
- A molecular docking pipeline for the drug database against SARS-CoV2☆14Jan 20, 2021Updated 5 years ago
- Release COVID-19 (SARS-CoV-2) FDA / NHI drugs screening results.☆25Mar 12, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Original repo: https://github.com/nachoapps/dadguide-data☆11May 14, 2023Updated 3 years ago
- Variant Calling Pipeline in Cromwell/WDL☆22Feb 22, 2020Updated 6 years ago
- ☆14May 25, 2018Updated 8 years ago
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 5 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 8 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Nov 30, 2020Updated 5 years ago
- ☆22Feb 19, 2025Updated last year
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Oct 31, 2022Updated 3 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- ☆17Sep 2, 2019Updated 6 years ago
- Free, open source crypto trading bot☆12Apr 7, 2021Updated 5 years ago
- Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi☆21Jan 28, 2025Updated last year
- This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…☆43May 18, 2022Updated 4 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆74Feb 4, 2021Updated 5 years ago
- Extracting gene sets from published pathway figures☆15May 23, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R packages☆13Aug 6, 2026Updated last week
- ☆36Aug 13, 2020Updated 6 years ago
- A comprehensive tutorial about GWAS and PRS☆1,014Apr 1, 2023Updated 3 years ago
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆26Nov 18, 2023Updated 2 years ago
- ☆22May 28, 2026Updated 2 months ago
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated 2 years ago
- fork of dorado that supports S/BLOW5☆13May 29, 2026Updated 2 months ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Mar 16, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Nov 1, 2022Updated 3 years ago
- Complete Genome Assembly Toolkit☆38Updated this week
- phenotype-based prioritization of candidate genes for human diseases☆64Jan 25, 2023Updated 3 years ago
- Python module to read binary Plink files.☆18Mar 25, 2026Updated 4 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 2 weeks ago
- An Interactive Anatomography Widget for Shiny☆13Jan 8, 2025Updated last year
- ☆11Mar 16, 2020Updated 6 years ago