daler / chromhmm-tools
Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)
☆17Updated 6 years ago
Alternatives and similar repositories for chromhmm-tools:
Users that are interested in chromhmm-tools are comparing it to the libraries listed below
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 7 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆28Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆13Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆15Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 5 months ago
- ☆33Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆29Updated 2 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 7 months ago