daler / chromhmm-tools
Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)
☆17Updated 6 years ago
Alternatives and similar repositories for chromhmm-tools:
Users that are interested in chromhmm-tools are comparing it to the libraries listed below
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆13Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago
- ☆33Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated this week
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated 2 months ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 5 months ago
- ☆17Updated 6 years ago
- ☆36Updated 2 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆86Updated 6 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- workshop website on readthedocs☆19Updated 2 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆33Updated 3 months ago
- Identify and correct invalid gene symbols☆59Updated 3 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- A preprocessing and QC pipeline for HiChIP data☆35Updated 2 years ago
- ☆28Updated 6 years ago