Alternatives and similar repositories for UTR-LM

Users that are interested in UTR-LM are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆74Updated last year
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆34Updated 10 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆73Updated 2 months ago
• CatIIIIIIII / RNAErnie
  Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
  ☆46Updated 7 months ago
• tymor22 / tm-vec
  ☆68Updated 8 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆75Updated last year
• Doudna-lab / GARNET_DL
  ☆37Updated 4 months ago
• bm2-lab / PanPep
  ☆49Updated last year
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆102Updated 2 weeks ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 7 months ago
• yikunpku / RNA-MSM
  Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…
  ☆62Updated 10 months ago
• enijkamp / progen2
  Official release of the ProGen models
  ☆32Updated 4 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆99Updated 8 months ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆130Updated 11 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆59Updated 4 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆53Updated last year
• robpearc / DeepFoldRNA
  ☆35Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆106Updated 9 months ago
• pgmikhael / protgps
  ☆84Updated last month
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆100Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 3 months ago
• Bruce-ywj / ERNIE-RNA
  Code of a structure-enhanced RNA language model named ERNIE-RNA
  ☆20Updated 2 weeks ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆38Updated last year
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆73Updated this week
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆30Updated 5 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆38Updated 8 months ago
• WangLabTHU / GPro
  GPro: a toolbox for Generative approaches in promoter design
  ☆19Updated last year