Alternatives and similar repositories for UTR-LM

Users that are interested in UTR-LM are comparing it to the libraries listed below

• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆38Updated last year
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆75Updated 6 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆82Updated last year
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆128Updated 4 months ago
• CatIIIIIIII / RNAErnie
  Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
  ☆53Updated 11 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆50Updated 11 months ago
• bm2-lab / PanPep
  ☆50Updated last year
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆104Updated 3 weeks ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆134Updated last year
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆94Updated last week
• uci-cbcl / UFold
  ☆73Updated 5 months ago
• ntranoslab / esm-variants
  ☆80Updated 2 years ago
• tymor22 / tm-vec
  ☆69Updated last year
• mana438 / RNABERT
  ☆57Updated 2 years ago
• pgmikhael / protgps
  ☆94Updated 3 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• RainaBio / GEMORNA
  This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.
  ☆43Updated last month
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆183Updated last year
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆104Updated 3 years ago
• LinearDesignSoftware / LinearDesign
  The LinearDesign mRNA design software.
  ☆191Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• JiangBioLab / DLpTCR
  Predicting immunogenic peptide recognized by TCR through ensemble deep learning
  ☆15Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆73Updated 2 years ago
• a96123155 / TransPHLA-AOMP
  ☆48Updated 3 years ago
• enijkamp / progen2
  Official release of the ProGen models
  ☆35Updated 8 months ago
• mxfold / mxfold2
  MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
  ☆144Updated 3 months ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆128Updated 10 months ago
• robpearc / DeepFoldRNA
  ☆35Updated last year
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆20Updated 3 years ago