☆95Oct 9, 2024Updated last year
Alternatives and similar repositories for UTR-LM
Users that are interested in UTR-LM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jun 22, 2024Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆24Jul 2, 2024Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆143Jun 12, 2024Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆360May 27, 2025Updated 9 months ago
- MTAE-based 5UTR design model☆10Jan 23, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆22May 11, 2025Updated 10 months ago
- RiboNucleic Acid (RNA) Language Model☆159Oct 3, 2025Updated 5 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Code repository of "Deep generative design of RNA family sequences"☆40Nov 10, 2025Updated 4 months ago
- The LinearDesign mRNA design software.☆207Jun 4, 2024Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆54Jan 12, 2026Updated 2 months ago
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Jul 6, 2025Updated 8 months ago
- Code for 5UTR project☆26May 20, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆84Nov 11, 2025Updated 4 months ago
- ☆18Updated this week
- ☆56Sep 11, 2024Updated last year
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Sep 7, 2023Updated 2 years ago
- RNA Multiple Sequence Alignment☆50Jul 20, 2023Updated 2 years ago
- A Foundation Language Model For Multilayer Regulation of RNA☆20Nov 30, 2025Updated 3 months ago
- Code for the Framepool model☆14Feb 1, 2025Updated last year
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆222May 29, 2025Updated 9 months ago
- ☆16May 22, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- ☆19Mar 21, 2024Updated 2 years ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 11 months ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆42Sep 23, 2025Updated 6 months ago
- ☆86Sep 20, 2023Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.☆358Mar 18, 2026Updated last week
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆53Nov 17, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆51Oct 31, 2025Updated 4 months ago
- ☆15May 6, 2024Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆43Sep 12, 2024Updated last year
- ☆33Aug 12, 2024Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆64Updated this week
- ☆20Oct 18, 2024Updated last year
- A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.☆67Nov 1, 2025Updated 4 months ago