Alternatives and similar repositories for UTR-LM:

Users that are interested in UTR-LM are comparing it to the libraries listed below

• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆31Updated 7 months ago
• mana438 / RNABERT
  ☆51Updated last year
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆62Updated 4 months ago
• yikunpku / RNA-MSM
  Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…
  ☆55Updated 6 months ago
• ntranoslab / esm-variants
  ☆72Updated last year
• CatIIIIIIII / RNAErnie
  Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
  ☆40Updated 4 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆69Updated 10 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆46Updated 4 months ago
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆83Updated 3 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆93Updated 5 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆50Updated 9 months ago
• bm2-lab / PanPep
  ☆46Updated last year
• Doudna-lab / GARNET_DL
  ☆33Updated last month
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆48Updated 2 weeks ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆57Updated last year
• tymor22 / tm-vec
  ☆65Updated 4 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆72Updated 6 months ago
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆19Updated 2 years ago
• pengxingang / TEIM
  TEIM: TCR-Epitope Interaction Modeling
  ☆45Updated last year
• WangLabTHU / GPro
  GPro: a toolbox for Generative approaches in promoter design
  ☆17Updated 11 months ago
• ml4bio / RhoFold
  Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach
  ☆79Updated 2 months ago
• enijkamp / progen2
  Official release of the ProGen models
  ☆28Updated 3 weeks ago
• JiangBioLab / DLpTCR
  Predicting immunogenic peptide recognized by TCR through ensemble deep learning
  ☆13Updated 9 months ago
• kkyamada / bert-rbp
  ☆29Updated 2 years ago
• ml4bio / USPNet
  Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
  ☆29Updated 2 months ago
• robpearc / DeepFoldRNA
  ☆28Updated last year
• piercelab / tcrmodel2
  ☆37Updated 4 months ago
• a96123155 / TransPHLA-AOMP
  ☆41Updated 3 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆32Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆65Updated last year