☆96Oct 9, 2024Updated last year
Alternatives and similar repositories for UTR-LM
Users that are interested in UTR-LM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jun 22, 2024Updated 2 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆25Jul 2, 2024Updated 2 years ago
- MTAE-based 5UTR design model☆11Jan 23, 2024Updated 2 years ago
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated 3 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆390May 27, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆30Oct 7, 2022Updated 3 years ago
- RiboNucleic Acid (RNA) Language Model☆173May 4, 2026Updated 3 months ago
- Code repository of "Deep generative design of RNA family sequences"☆44Apr 8, 2026Updated 4 months ago
- The LinearDesign mRNA design software.☆215Jun 4, 2024Updated 2 years ago
- Protein language model trained on coding DNA☆55Oct 20, 2024Updated last year
- ☆17May 22, 2025Updated last year
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆100Nov 11, 2025Updated 9 months ago
- ☆17Dec 17, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for 5UTR project☆26May 20, 2023Updated 3 years ago
- ☆10Nov 6, 2023Updated 2 years ago
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Jul 6, 2025Updated last year
- ☆20Dec 5, 2024Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆65Jan 12, 2026Updated 7 months ago
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 9 months ago
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆46May 3, 2026Updated 4 months ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code for the Framepool model☆16Feb 1, 2025Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆65Aug 2, 2024Updated 2 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- ☆56Sep 11, 2024Updated last year
- ☆89Sep 20, 2023Updated 2 years ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated 11 months ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆246May 29, 2025Updated last year
- A repository for neural representational learning of RNA secondary structures☆33Feb 13, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆56Nov 17, 2024Updated last year
- A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.☆90Nov 1, 2025Updated 10 months ago
- With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IG…☆16Aug 6, 2026Updated 3 weeks ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆70May 8, 2026Updated 3 months ago
- ☆26Jun 5, 2025Updated last year
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated 2 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆44Sep 12, 2024Updated last year