A repository for neural representational learning of RNA secondary structures
☆32Feb 13, 2020Updated 6 years ago
Alternatives and similar repositories for RNAonGraph
Users that are interested in RNAonGraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modelling RBP binding preferences to predict RPB binding sites☆11Mar 4, 2021Updated 5 years ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆33Oct 23, 2021Updated 4 years ago
- ☆16Sep 6, 2022Updated 3 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- ☆56Oct 2, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆31Jan 27, 2023Updated 3 years ago
- ☆29Nov 6, 2022Updated 3 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆69Mar 3, 2024Updated 2 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆36Dec 26, 2022Updated 3 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Jul 19, 2018Updated 7 years ago
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Jul 6, 2025Updated 11 months ago
- ARES implement in PyTorch☆17Feb 27, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated 9 months ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆383May 27, 2025Updated last year
- ☆17Dec 18, 2024Updated last year
- ☆36Jan 14, 2025Updated last year
- ☆17Oct 10, 2021Updated 4 years ago
- [WWW 2023] Code for "Graph Neural Networks with Diverse Spectral Filtering"☆22Dec 15, 2023Updated 2 years ago
- Library for KEGG pathway enrichment analysis☆19Jun 12, 2026Updated 2 weeks ago
- Official implementation of the paper "SAINT"☆17Mar 12, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆18Mar 29, 2023Updated 3 years ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- ☆14Dec 2, 2024Updated last year
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated 2 years ago
- PyTorch Version of BP MLL loss function for multilabel classification☆15Apr 13, 2020Updated 6 years ago
- 🧪 Optimized protocol for m6A-SAC-seq☆13Jun 16, 2025Updated last year
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- ☆94Oct 9, 2024Updated last year
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Jun 6, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆758Jan 22, 2026Updated 5 months ago
- ☆14Sep 1, 2024Updated last year
- A curated and categorized paper list of gnn-based complex graph learning.☆11Apr 9, 2023Updated 3 years ago
- Aptamers are single-stranded nucleic acid or amino acid polymers that recognize and bind to targets with high affinity and selectivity. …☆16Jun 22, 2020Updated 6 years ago
- repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effe…☆13Jul 16, 2022Updated 3 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Feb 2, 2021Updated 5 years ago
- A generative adversarial network-based model to generate synthetic RNA sequences to target proteins☆11Sep 2, 2025Updated 9 months ago