Alternatives and similar repositories for 5UTR

Users that are interested in 5UTR are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆77Updated last year
• lingxusb / Riboformer
  ☆22Updated 2 months ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆31Updated 7 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• a96123155 / UTR-LM
  ☆90Updated 10 months ago
• kundajelab / DART-Eval
  ☆39Updated last month
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆25Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆50Updated 6 years ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆22Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 4 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆178Updated last year
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆84Updated 3 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 5 months ago
• tycui / GWAS_NN
  Code for "Gene-Gene Interaction Detection with Deep Learning"
  ☆13Updated 2 years ago
• Sanofi-Public / RiboNN
  RiboNN: predicting translation efficiencies from mRNA sequences
  ☆32Updated last month
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆81Updated last year
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆56Updated 3 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆91Updated 6 months ago
• ShenLab / gMVP
  ☆21Updated 2 years ago
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆20Updated 2 years ago
• VariantEffect / mavedb-api
  MaveDB API
  ☆11Updated last week
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆25Updated 2 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆79Updated last week
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆71Updated last month
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆72Updated 2 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆12Updated 2 years ago