Alternatives and similar repositories for 5UTR

Users that are interested in 5UTR are comparing it to the libraries listed below

• holab-hku / MTtrans
  ☆9Updated last year
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆29Updated 4 months ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆34Updated 3 years ago
• kundajelab / DART-Eval
  ☆34Updated last month
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆21Updated 11 months ago
• xiongxslab / Translatomer
  ☆21Updated 4 months ago
• ntranoslab / esm-variants
  ☆74Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 2 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆53Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆48Updated 5 years ago
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆24Updated 2 years ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆80Updated 3 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆18Updated 2 months ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆59Updated this week
• BackofenLab / RNAProt
  Modelling RBP binding preferences to predict RPB binding sites
  ☆11Updated last year
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 3 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆53Updated 3 years ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆15Updated 4 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆37Updated last month
• ShenLab / gMVP
  ☆21Updated 2 years ago
• Rostlab / ProNA2020
  ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence
  ☆14Updated 4 years ago
• lingxusb / Riboformer
  ☆20Updated 2 weeks ago
• kkyamada / bert-rbp
  ☆29Updated 2 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆45Updated last year
• jzhoulab / puffin_manuscript
  ☆17Updated 8 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆79Updated last year
• VariantEffect / mavedb-api
  MaveDB API
  ☆12Updated this week
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆32Updated 8 months ago