A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.
☆90Nov 1, 2025Updated 9 months ago
Alternatives and similar repositories for CodonFM
Users that are interested in CodonFM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.☆56Dec 19, 2025Updated 8 months ago
- DualBind is a 3D structure-based deep learning model with a dual-loss framework for accurate and fast protein-ligand binding affinity pre…☆25Oct 21, 2025Updated 10 months ago
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆94Jun 5, 2026Updated 2 months ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆64Jan 12, 2026Updated 7 months ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆52Mar 22, 2026Updated 5 months ago
- A Foundation Language Model For Multilayer Regulation of RNA☆15Nov 5, 2025Updated 9 months ago
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆100Nov 11, 2025Updated 9 months ago
- BioNeMo Recipes: For building and adapting AI models in drug discovery at scale☆848Updated this week
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆309Sep 23, 2025Updated 11 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆272Jul 24, 2025Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated 3 months ago
- Code associated with the publication 'Generative and predictive neural networks for the design of functional RNA molecules'☆15Apr 8, 2025Updated last year
- KERMT is a pretrained graph neural network model for molecular property prediction.☆96Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- [Adv. Sci. 2025] PRO-LDM: A Conditional Latent Diffusion Model for Protein Sequence Design and Functional Optimization☆16Jul 11, 2025Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆65Aug 2, 2024Updated 2 years ago
- ☆17Dec 17, 2025Updated 8 months ago
- NVIDIA BioNeMo☆76Jun 22, 2026Updated 2 months ago
- A high-performance, GPU-accelerated library for key computational chemistry tasks, such as molecular similarity, conformer generation, an…☆273Updated this week
- ☆18Apr 21, 2026Updated 4 months ago
- ReaSyn is a model for predicting a molecule's synthesis pathway, reaction steps from building blocks to final product(s), using an encode…☆113Jul 18, 2026Updated last month
- ☆23Sep 19, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GB.ModelGenerator is a software stack that enables researchers to adapt pretrained models and generate finetuned models for downstream ta…☆125Aug 19, 2026Updated last week
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆19Jun 19, 2025Updated last year
- ☆18Dec 2, 2025Updated 8 months ago
- ☆32Aug 6, 2026Updated 3 weeks ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- ☆96Oct 9, 2024Updated last year
- Foundation Models for Genomics & Transcriptomics☆913Feb 24, 2026Updated 6 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆134Oct 31, 2024Updated last year
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆29Nov 26, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 4 months ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 3 months ago
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 9 months ago
- Collection of mRNA benchmarks☆53Updated this week
- Saluki, a method to predict mRNA half-lives from sequence☆30Oct 7, 2022Updated 3 years ago
- ☆30Sep 9, 2025Updated 11 months ago
- ☆111Jul 16, 2026Updated last month