A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.
☆86Nov 1, 2025Updated 8 months ago
Alternatives and similar repositories for CodonFM
Users that are interested in CodonFM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.☆56Dec 19, 2025Updated 7 months ago
- DualBind is a 3D structure-based deep learning model with a dual-loss framework for accurate and fast protein-ligand binding affinity pre…☆24Oct 21, 2025Updated 8 months ago
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆90Jun 5, 2026Updated last month
- RiboNN: predicting translation efficiencies from mRNA sequences☆62Jan 12, 2026Updated 6 months ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆51Mar 22, 2026Updated 3 months ago
- A Foundation Language Model For Multilayer Regulation of RNA☆15Nov 5, 2025Updated 8 months ago
- BioNeMo Recipes: For building and adapting AI models in drug discovery at scale☆826Updated this week
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆98Nov 11, 2025Updated 8 months ago
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆304Sep 23, 2025Updated 9 months ago
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated 2 months ago
- Code associated with the publication 'Generative and predictive neural networks for the design of functional RNA molecules'☆15Apr 8, 2025Updated last year
- KERMT is a pretrained graph neural network model for molecular property prediction.☆88Updated this week
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- [Adv. Sci. 2025] PRO-LDM: A Conditional Latent Diffusion Model for Protein Sequence Design and Functional Optimization☆15Jul 11, 2025Updated last year
- ☆16Dec 17, 2025Updated 7 months ago
- ReaSyn is a model for predicting a molecule's synthesis pathway, reaction steps from building blocks to final product(s), using an encode…☆106Updated this week
- A high-performance, GPU-accelerated library for key computational chemistry tasks, such as molecular similarity, conformer generation, an…☆265Jul 9, 2026Updated last week
- ☆16Apr 21, 2026Updated 3 months ago
- ☆22Sep 19, 2025Updated 10 months ago
- Foundation Models for Genomics & Transcriptomics☆897Feb 24, 2026Updated 4 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆118Feb 25, 2026Updated 4 months ago
- ☆17May 22, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆19Jun 19, 2025Updated last year
- ☆16Dec 2, 2025Updated 7 months ago
- ☆31Jul 8, 2026Updated last week
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆21Jul 12, 2026Updated last week
- ☆94Oct 9, 2024Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆132Oct 31, 2024Updated last year
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆29Nov 26, 2025Updated 7 months ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 3 months ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 7 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Collection of mRNA benchmarks☆54Jun 9, 2026Updated last month
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆20Updated this week
- ☆109Updated this week
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆128Dec 10, 2025Updated 7 months ago