Repository for mRNA Paper and CodonBERT publication.
☆145May 19, 2026Updated 2 months ago
Alternatives and similar repositories for CodonBERT
Users that are interested in CodonBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- ☆17Dec 17, 2025Updated 7 months ago
- ☆95Oct 9, 2024Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆44Sep 12, 2024Updated last year
- ☆20Oct 18, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for the Framepool model☆16Feb 1, 2025Updated last year
- ☆20Dec 5, 2024Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆388May 27, 2025Updated last year
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- Collection of mRNA benchmarks☆53Aug 1, 2026Updated last week
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆64Aug 2, 2024Updated 2 years ago
- ☆10Nov 6, 2023Updated 2 years ago
- The LinearDesign mRNA design software.☆215Jun 4, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Eterna100-V2 benchmarking results and scripts☆14May 19, 2026Updated 2 months ago
- Reference-free analysis of genetic architecture☆23Sep 21, 2024Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated last year
- ☆52Mar 22, 2026Updated 4 months ago
- A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.☆88Nov 1, 2025Updated 9 months ago
- ☆16May 19, 2026Updated 2 months ago
- ☆26Jun 5, 2025Updated last year
- Genomic sequence preprocessing toolkit☆14Jul 27, 2026Updated 2 weeks ago
- ☆21Oct 2, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 5 months ago
- ☆218Sep 24, 2024Updated last year
- Biological foundation modeling from molecular to genome scale☆1,552Mar 20, 2026Updated 4 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆128Dec 10, 2025Updated 8 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Dec 9, 2021Updated 4 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆26Jun 26, 2024Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆68May 8, 2026Updated 3 months ago
- ☆52Aug 19, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- ☆88Sep 20, 2023Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆318Mar 6, 2026Updated 5 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆110Jun 23, 2026Updated last month
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆43Apr 8, 2026Updated 4 months ago
- ☆83Jun 29, 2025Updated last year