Repository for mRNA Paper and CodonBERT publication.
☆148May 19, 2026Updated 5 months ago
Alternatives and similar repositories for CodonBERT
Users that are interested in CodonBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆44Sep 12, 2024Updated 2 years ago
- Protein language model trained on coding DNA☆56Oct 20, 2024Updated 2 years ago
- ☆17Dec 17, 2025Updated 10 months ago
- ☆99Oct 9, 2024Updated 2 years ago
- ☆20Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- Code for the Framepool model☆16Feb 1, 2025Updated last year
- ☆20Oct 18, 2024Updated 2 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆61Jul 3, 2019Updated 7 years ago
- The LinearDesign mRNA design software.☆219Jun 4, 2024Updated 2 years ago
- ☆10Nov 6, 2023Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆394May 27, 2025Updated last year
- Collection of mRNA benchmarks☆55Updated this week
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆66Aug 2, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Saluki, a method to predict mRNA half-lives from sequence☆32Oct 7, 2022Updated 4 years ago
- ☆221Sep 24, 2024Updated 2 years ago
- A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.☆101Oct 19, 2026Updated 2 weeks ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆25Jul 2, 2024Updated 2 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆46Jul 3, 2025Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆135Oct 31, 2024Updated 2 years ago
- Biological foundation modeling from molecular to genome scale☆1,585Mar 20, 2026Updated 7 months ago
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆101Nov 11, 2025Updated 11 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆54Aug 13, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆73Feb 21, 2026Updated 8 months ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆69Sep 30, 2026Updated last month
- Eterna100-V2 benchmarking results and scripts☆15Oct 27, 2026Updated last week
- Trias: an encoder-decoder model for generating synthetic eukaryotic mRNA sequences☆14Apr 28, 2026Updated 6 months ago
- ☆53Mar 22, 2026Updated 7 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆132Dec 10, 2025Updated 10 months ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆322Dec 16, 2025Updated 10 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Dec 9, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆57Oct 2, 2023Updated 3 years ago
- Code repository of "Deep generative design of RNA family sequences"☆44Apr 8, 2026Updated 6 months ago
- CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆228Jul 27, 2025Updated last year
- ☆17May 19, 2026Updated 5 months ago
- ☆53Aug 19, 2024Updated 2 years ago
- ☆27Jun 5, 2025Updated last year
- ☆24Oct 2, 2024Updated 2 years ago