Repository for mRNA Paper and CodonBERT publication.
☆144Jun 12, 2024Updated last year
Alternatives and similar repositories for CodonBERT
Users that are interested in CodonBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- ☆94Oct 9, 2024Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆43Sep 12, 2024Updated last year
- ☆20Oct 18, 2024Updated last year
- Code for the Framepool model☆15Feb 1, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆112Dec 10, 2025Updated 4 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆367May 27, 2025Updated 11 months ago
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆23May 11, 2025Updated 11 months ago
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆91Nov 11, 2025Updated 5 months ago
- Eterna100-V2 benchmarking results and scripts☆13Oct 21, 2025Updated 6 months ago
- The LinearDesign mRNA design software.☆210Jun 4, 2024Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated 10 months ago
- Reference-free analysis of genetic architecture☆23Sep 21, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆50Mar 22, 2026Updated last month
- A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.☆75Nov 1, 2025Updated 6 months ago
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 3 months ago
- ☆18Mar 31, 2026Updated last month
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- ☆26Jun 5, 2025Updated 11 months ago
- ☆19Oct 2, 2024Updated last year
- ☆16Apr 1, 2025Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Feb 21, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆213Sep 24, 2024Updated last year
- Biological foundation modeling from molecular to genome scale☆1,505Mar 20, 2026Updated last month
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated last month
- Interpretation by Deep Generative Masking for Biological Sequences☆37Dec 9, 2021Updated 4 years ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆20Mar 29, 2026Updated last month
- ☆52Aug 19, 2024Updated last year
- Collection of mRNA benchmarks☆50Mar 25, 2026Updated last month
- ☆87Sep 20, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆51Oct 4, 2024Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆310Mar 6, 2026Updated last month
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 10 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆107Jan 31, 2026Updated 3 months ago
- ☆19Nov 21, 2025Updated 5 months ago
- Code repository of "Deep generative design of RNA family sequences"☆40Apr 8, 2026Updated 3 weeks ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 11 months ago