Sanofi-Public / CodonBERTLinks
Repository for mRNA Paper and CodonBERT publication.
☆134Updated last year
Alternatives and similar repositories for CodonBERT
Users that are interested in CodonBERT are comparing it to the libraries listed below
Sorting:
- ☆90Updated 10 months ago
- RiboNucleic Acid (RNA) Language Model☆120Updated 2 months ago
- Protein language model trained on coding DNA☆49Updated 10 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆92Updated last week
- Primary RNA sequence model☆38Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆66Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 speci…☆172Updated last month
- Evolutionary velocity with protein language models☆94Updated last year
- ☆107Updated last year
- Predict the structure of immune receptor proteins☆53Updated 9 months ago
- ☆92Updated 2 months ago
- ☆69Updated 4 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆102Updated 2 weeks ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆121Updated last month
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆178Updated last year
- Official release of the ProGen models☆34Updated 6 months ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆71Updated 6 months ago
- ☆68Updated 11 months ago
- Biological prediction models made simple.☆44Updated this week
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆97Updated last week
- PLM based active learning model for protein engineering☆82Updated last year
- Geometric deep learning of protein–DNA binding specificity☆76Updated 5 months ago
- Neural Networks for Protein Sequence Alignment☆125Updated 9 months ago
- AbLang: A language model for antibodies☆146Updated last year
- ☆35Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆81Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- ☆113Updated last year