Alternatives and similar repositories for CodonBERT:

Users that are interested in CodonBERT are comparing it to the libraries listed below

• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆46Updated 4 months ago
• genbio-ai / AIDO
  AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…
  ☆67Updated 2 months ago
• a96123155 / UTR-LM
  ☆77Updated 5 months ago
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆35Updated 9 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆74Updated 7 months ago
• aqlaboratory / rgn2
  ☆104Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆147Updated last year
• varun-shanker / structural-evolution
  ☆98Updated 8 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆142Updated 5 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆71Updated 11 months ago
• ml4bio / RhoFold
  Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach
  ☆96Updated 2 months ago
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆88Updated last week
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆90Updated this week
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆95Updated 5 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆52Updated last month
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆97Updated last year
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆99Updated 3 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆192Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆88Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆68Updated 10 months ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆100Updated this week
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆137Updated last year
• tymor22 / tm-vec
  ☆65Updated 5 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆58Updated last year
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆90Updated last week
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆127Updated last month
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆214Updated 2 years ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆158Updated 6 months ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆60Updated last year