Sanofi-Public / CodonBERTLinks
Repository for mRNA Paper and CodonBERT publication.
☆143Updated last year
Alternatives and similar repositories for CodonBERT
Users that are interested in CodonBERT are comparing it to the libraries listed below
Sorting:
- ☆95Updated last year
- RiboNucleic Acid (RNA) Language Model☆155Updated 4 months ago
- Protein language model trained on coding DNA☆53Updated last year
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆104Updated 3 weeks ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆74Updated 2 years ago
- Primary RNA sequence model☆42Updated last year
- ☆78Updated 9 months ago
- Evolutionary velocity with protein language models☆97Updated 2 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆112Updated last month
- ☆99Updated 7 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆105Updated 4 years ago
- Official release of the ProGen models☆55Updated last year
- ☆109Updated 2 years ago
- Biological prediction models made simple.☆48Updated 3 weeks ago
- CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆195Updated 6 months ago
- ☆76Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆87Updated 2 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆88Updated last year
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆144Updated 4 months ago
- Predict the structure of immune receptor proteins☆59Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆117Updated 6 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆191Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆40Updated 3 months ago
- ProCyon: A multimodal foundation model for protein phenotypes☆56Updated 2 months ago
- Efficient evolution from protein language models☆220Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆109Updated last month
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆159Updated last week
- ☆122Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year