Alternatives and similar repositories for MTtrans

Users that are interested in MTtrans are comparing it to the libraries listed below

• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆83Updated 3 years ago
• Karollus / 5UTR
  Code for the Framepool model
  ☆13Updated 6 months ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 4 months ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆18Updated 4 months ago
• lingxusb / Riboformer
  ☆20Updated last month
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆33Updated 3 years ago
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆69Updated 2 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆54Updated 3 years ago
• XWangLabTHU / NeuronMotif
  NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
  ☆15Updated 2 years ago
• ntranoslab / esm-variants
  ☆76Updated last year
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆31Updated 6 months ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆27Updated 8 months ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆65Updated last year
• TencentAILabHealthcare / SC-AIR-BERT
  ☆9Updated 2 years ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆84Updated last month
• xiongxslab / Translatomer
  ☆22Updated 5 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆120Updated 2 months ago
• idekerlab / DrugCell
  A visible neural network model for drug response prediction
  ☆144Updated last year
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆25Updated 2 years ago
• liu-bioinfo-lab / EPCOT
  ☆23Updated last year
• pmoris / ImRex
  Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes
  ☆16Updated 2 years ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆15Updated 4 years ago
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆52Updated 6 years ago
• TencentAILabHealthcare / DeepAIR
  ☆35Updated 2 years ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆77Updated last year
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆21Updated last year
• GfellerLab / MixTCRpred
  Predictor of TCR-epitope interactions
  ☆28Updated 6 months ago