oxpig / CaLM
Protein language model trained on coding DNA
☆46Updated 5 months ago
Alternatives and similar repositories for CaLM:
Users that are interested in CaLM are comparing it to the libraries listed below
- ☆67Updated 6 months ago
- RNA Multiple Sequence Alignment☆38Updated last year
- ☆36Updated 2 months ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆56Updated 2 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆71Updated 11 months ago
- Efficient implementatin of ESM family.☆54Updated 2 months ago
- PLM based active learning model for protein engineering☆77Updated 8 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 7 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆28Updated 7 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 8 months ago
- Public repository describing training and testing of AntiBERTa.☆58Updated last year
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆27Updated 4 years ago
- ☆34Updated last year
- ☆19Updated 5 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 2 months ago
- Learning the language of protein-protein interactions☆62Updated 2 weeks ago
- Aligning protein generative models with experimental fitness☆89Updated 5 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆54Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 6 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆49Updated this week
- ☆25Updated 10 months ago
- ☆62Updated 3 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆46Updated 4 months ago
- ☆37Updated 3 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆97Updated 6 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆47Updated 3 months ago
- ☆45Updated 5 months ago
- ☆64Updated 3 weeks ago