A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs
☆17Jul 6, 2025Updated last year
Alternatives and similar repositories for DeepCIP
Users that are interested in DeepCIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆56Nov 17, 2024Updated last year
- ☆12Feb 19, 2021Updated 5 years ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 6 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- ☆25Jun 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆94Oct 9, 2024Updated last year
- Analysis and design of protein-protein or protein-peptide interactions based on atlas database.☆15Sep 27, 2022Updated 3 years ago
- ☆13Nov 29, 2024Updated last year
- ☆10Sep 25, 2019Updated 6 years ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- ☆11Jan 23, 2019Updated 7 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- ☆14Oct 16, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Dec 2, 2022Updated 3 years ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆31Oct 1, 2021Updated 4 years ago
- Eterna100-V2 benchmarking results and scripts☆14May 19, 2026Updated 2 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- ☆16May 7, 2023Updated 3 years ago
- IDR☆31Mar 30, 2023Updated 3 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Arnie-based DegScore tool.☆27Sep 30, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Nov 19, 2021Updated 4 years ago
- A curated list of awesome Bayesian statistics blogs and resources☆24Nov 12, 2023Updated 2 years ago
- a R package to identify neoantigens from NGS data☆18Jun 29, 2017Updated 9 years ago
- MTAE-based 5UTR design model☆10Jan 23, 2024Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 5 months ago
- Contains CHARMING.py and its associated README.md☆13Oct 20, 2022Updated 3 years ago
- The LinearDesign mRNA design software.☆213Jun 4, 2024Updated 2 years ago
- Generative Adversarial Network: Optimization in Targeted Design☆16Apr 12, 2022Updated 4 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- IRESfinder is a python package for the identification of RNA internal ribosome entry site in eukaryotic cell☆20Aug 27, 2021Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- https://relab.xidian.edu.cn/AgeAnno/#/☆15Oct 22, 2022Updated 3 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- End-to-end RNA Design using deep reinforcement learning☆73Sep 26, 2022Updated 3 years ago