zjupgx / DeepCIP
A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs
☆17Updated last year
Alternatives and similar repositories for DeepCIP:
Users that are interested in DeepCIP are comparing it to the libraries listed below
- HLA-I ligand predictor☆37Updated 4 months ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated this week
- Integer programming based prediction of RNA secondary structures with pseudoknots☆21Updated 10 months ago
- Evolutionary conservation estimation of residues or nucleotides☆39Updated 3 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆52Updated last year
- ☆40Updated 3 years ago
- A visualization software for antibody multi sequence alignment☆18Updated 10 months ago
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆15Updated last year
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆20Updated last month
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 7 months ago
- Feature map and function annotation of Proteins☆33Updated 10 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 5 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- ☆27Updated 3 weeks ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- ☆22Updated last year
- Arnie-based DegScore tool.☆25Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 8 months ago
- ☆24Updated last year
- ☆24Updated last month
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆16Updated 3 years ago
- Codon optimizer for tissue-specific expression☆17Updated 7 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- ☆73Updated last year
- HLA-II ligand predictor.☆43Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year