The LinearDesign mRNA design software.
☆211Jun 4, 2024Updated 2 years ago
Alternatives and similar repositories for LinearDesign
Users that are interested in LinearDesign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codon Optimizer for mRNA Vaccine Design☆26Sep 25, 2024Updated last year
- ☆94Oct 9, 2024Updated last year
- Contains CHARMING.py and its associated README.md☆12Oct 20, 2022Updated 3 years ago
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The new source code of the LinearFold, linear-time prediction for RNA secondary structures☆193Apr 4, 2024Updated 2 years ago
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆93Nov 11, 2025Updated 6 months ago
- python script that picks suitable targets for siRNA with off-target optimization☆16Oct 23, 2021Updated 4 years ago
- Draw RNA secondary structures in python.☆52Jun 24, 2025Updated 11 months ago
- iCodon customizes gene expression based on the codon composition☆16Oct 28, 2023Updated 2 years ago
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆72Apr 10, 2023Updated 3 years ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆35May 24, 2024Updated 2 years ago
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Jul 6, 2025Updated 11 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆374May 27, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- Tool for modelling the CDRs of antibodies☆51Jan 19, 2023Updated 3 years ago
- The ViennaRNA Package☆409Feb 24, 2026Updated 3 months ago
- ☆29Oct 3, 2023Updated 2 years ago
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆73Oct 11, 2023Updated 2 years ago
- Predict the structure of immune receptor proteins☆59Nov 8, 2024Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Dec 27, 2022Updated 3 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- ☆13Jul 14, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆43Sep 12, 2024Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆58Jan 12, 2026Updated 4 months ago
- Convenience Python APIs for antibody numbering using ANARCI☆123May 19, 2025Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆53Aug 13, 2024Updated last year
- DeepAAI☆36Dec 25, 2024Updated last year
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆30Oct 28, 2022Updated 3 years ago
- A generative adversarial network-based model to generate synthetic RNA sequences to target proteins☆11Sep 2, 2025Updated 9 months ago
- RiboNucleic Acid (RNA) Language Model☆164May 4, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Protein hallucination and inpainting with RoseTTAFold☆282Mar 30, 2023Updated 3 years ago
- ☆23Jul 14, 2024Updated last year
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated 2 years ago
- A neural based approach to the task of genetic codon optimization☆18Aug 17, 2020Updated 5 years ago
- UHCA☆11Jan 23, 2025Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆160Mar 22, 2026Updated 2 months ago
- Generative Language Modeling for Antibody Design☆190Oct 5, 2024Updated last year