LinearDesignSoftware / LinearDesign
The LinearDesign mRNA design software.
☆147Updated 3 months ago
Related projects: ⓘ
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆133Updated 6 months ago
- Install alphafold on the local machine, get out of docker.☆97Updated 2 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆132Updated 8 months ago
- Bilingual Language Model for Protein Sequence and Structure☆174Updated last month
- predicting peptide-protein interactions☆117Updated 8 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆65Updated 5 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆112Updated 4 months ago
- RNA foundation model☆189Updated 5 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆150Updated 6 months ago
- ☆64Updated 5 months ago
- ☆195Updated this week
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆147Updated last week
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆103Updated last month
- Multi-task and masked language model-based protein sequence embedding models.☆95Updated 3 years ago
- Multi-class signal peptide prediction and structure decoding model.☆78Updated 7 months ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆217Updated last month
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆142Updated last year
- Efficient evolution from protein language models☆167Updated last year
- ☆63Updated last year
- ☆43Updated 9 months ago
- Convenience Python APIs for antibody numbering using ANARCI☆80Updated this week
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆45Updated 4 months ago
- ☆101Updated 9 months ago
- ☆40Updated 2 years ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆91Updated last year
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆141Updated this week
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆83Updated this week
- Antibody Numbering and Antigen Receptor ClassIfication☆178Updated 4 months ago
- RiboNucleic Acid (RNA) Language Model☆56Updated 4 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆118Updated 2 years ago