LinearDesignSoftware / LinearDesign
The LinearDesign mRNA design software.
☆179Updated 10 months ago
Alternatives and similar repositories for LinearDesign:
Users that are interested in LinearDesign are comparing it to the libraries listed below
- ☆263Updated last week
- Bilingual Language Model for Protein Sequence and Structure☆229Updated 3 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆126Updated this week
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆159Updated 6 months ago
- predicting peptide-protein interactions☆128Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆111Updated last year
- Install alphafold on the local machine, get out of docker.☆101Updated 3 years ago
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆162Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆102Updated 7 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆132Updated 2 months ago
- Efficient evolution from protein language models☆195Updated last year
- Code for ColabDock paper☆137Updated 5 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆148Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆255Updated 4 months ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆227Updated last week
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆152Updated last year
- Evolutionary couplings from protein and RNA sequence alignments☆261Updated last month
- ☆99Updated 8 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆72Updated 11 months ago
- ☆78Updated 5 months ago
- RiboNucleic Acid (RNA) Language Model☆92Updated 2 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆167Updated last year
- Geometric deep learning of protein–DNA binding specificity☆64Updated 2 weeks ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆256Updated this week
- Rifdock Library for Conformational Search☆152Updated 10 months ago
- Antibody Numbering and Antigen Receptor ClassIfication☆206Updated 10 months ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆158Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆124Updated 3 years ago
- Convenience Python APIs for antibody numbering using ANARCI☆94Updated 2 months ago
- open source code for Tencent tFold☆95Updated 3 weeks ago