LinearDesignSoftware / LinearDesign
The LinearDesign mRNA design software.
☆170Updated 7 months ago
Alternatives and similar repositories for LinearDesign:
Users that are interested in LinearDesign are comparing it to the libraries listed below
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆170Updated last month
- Bilingual Language Model for Protein Sequence and Structure☆212Updated 3 weeks ago
- ☆240Updated this week
- predicting peptide-protein interactions☆124Updated last year
- Install alphafold on the local machine, get out of docker.☆101Updated 3 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆120Updated 3 months ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆243Updated 6 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆105Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆120Updated last month
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆155Updated 11 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆144Updated last year
- Antibody Numbering and Antigen Receptor ClassIfication☆198Updated 8 months ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆141Updated last year
- Evolutionary couplings from protein and RNA sequence alignments☆251Updated last month
- ☆91Updated 6 months ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆154Updated 2 years ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆155Updated 4 months ago
- Efficient evolution from protein language models☆186Updated last year
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆60Updated 10 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆99Updated 5 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆163Updated 10 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆67Updated 9 months ago
- ☆102Updated last year
- Convenience Python APIs for antibody numbering using ANARCI☆90Updated last month
- ☆154Updated 3 years ago
- Code for ColabDock paper☆134Updated 3 months ago
- ☆73Updated 3 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆99Updated 3 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆122Updated 3 years ago
- Geometric deep learning of protein–DNA binding specificity☆60Updated 3 months ago