terry-r123 / RNABenchmarkLinks
[NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
☆48Updated last year
Alternatives and similar repositories for RNABenchmark
Users that are interested in RNABenchmark are comparing it to the libraries listed below
Sorting:
- ☆42Updated last year
- Primary RNA sequence model☆38Updated last year
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆114Updated 3 weeks ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆88Updated last week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆122Updated 9 months ago
- RiboNucleic Acid (RNA) Language Model☆117Updated 2 months ago
- ☆22Updated 2 months ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆188Updated 2 months ago
- Repository for mRNA Paper and CodonBERT publication.☆132Updated last year
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated last year
- ☆90Updated 9 months ago
- Large Language Models in Protein: A Comprehensive Survey☆112Updated 4 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆172Updated 2 months ago
- ☆44Updated 10 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆224Updated 2 weeks ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆245Updated 2 months ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆48Updated 10 months ago
- Protein language model trained on coding DNA☆47Updated 9 months ago
- OriGene: A Self-Evolving Virtual Disease Biologist for Mechanism-Guided Therapeutic Target Discovery☆132Updated this week
- ☆76Updated 2 months ago
- ☆69Updated 3 months ago
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆17Updated 4 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆130Updated 2 months ago
- ☆38Updated last month
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆54Updated 2 weeks ago
- Contextual AI models for single-cell protein biology☆88Updated 5 months ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a …☆65Updated last year
- open source code for Tencent tFold☆106Updated 4 months ago
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆24Updated last year
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆302Updated this week