[NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
☆62Aug 2, 2024Updated last year
Alternatives and similar repositories for RNABenchmark
Users that are interested in RNABenchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Apr 2, 2025Updated last year
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- ☆12Oct 24, 2024Updated last year
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆18Jun 19, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BPfold: Deep generalizable prediction of RNA secondary structure via base pair motif energy.☆32Feb 24, 2026Updated last month
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆12Jan 2, 2025Updated last year
- ☆20Oct 18, 2024Updated last year
- ☆18Jun 22, 2024Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆362May 27, 2025Updated 10 months ago
- ☆49Mar 22, 2026Updated 3 weeks ago
- official code for "BoostStep: Boosting mathematical capability of Large Language Models via improved single-step reasoning"☆37Jan 21, 2025Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆64Apr 3, 2026Updated last week
- ☆23Mar 15, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆25Jun 5, 2025Updated 10 months ago
- ☆26May 19, 2024Updated last year
- [Findings@ACL'26] LLMRouterBench: A Massive Benchmark and Unified Framework for LLM Routing☆52Apr 6, 2026Updated last week
- scDNAm-GPT: A Foundation Model for Analyzing Single-Cell Whole-Genome Bisulfite Sequencing☆19Nov 30, 2025Updated 4 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆224May 29, 2025Updated 10 months ago
- ☆95Oct 9, 2024Updated last year
- ☆13Apr 23, 2025Updated 11 months ago
- ☆23Mar 25, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Repository for mRNA Paper and CodonBERT publication.☆143Jun 12, 2024Updated last year
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 8 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆108Feb 25, 2026Updated last month
- Scalable Deep Learning for RNA Secondary Structure Prediction☆42Sep 23, 2025Updated 6 months ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Sep 22, 2024Updated last year
- ☆21Dec 20, 2024Updated last year
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆33Jun 22, 2025Updated 9 months ago
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆27Nov 26, 2025Updated 4 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆149Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- [NeurIPS 2025] Beyond Masked and Unmasked: Discrete Diffusion Models via Partial Masking☆29Mar 18, 2026Updated 3 weeks ago
- This repository provides a comprehensive library for parallel training and LoRA algorithm implementations, supporting multiple parallel s…☆57Mar 25, 2026Updated 2 weeks ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated 2 years ago
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆71Aug 13, 2025Updated 8 months ago
- Differentiable RNA folding in JAX☆27Mar 25, 2025Updated last year
- Foundation Models for Genomics & Transcriptomics☆848Feb 24, 2026Updated last month