CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
☆43Sep 12, 2024Updated last year
Alternatives and similar repositories for CodonBERT
Users that are interested in CodonBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- iCodon customizes gene expression based on the codon composition☆16Oct 28, 2023Updated 2 years ago
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆213Jul 27, 2025Updated 11 months ago
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆23May 11, 2025Updated last year
- ☆15May 6, 2024Updated 2 years ago
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆71Apr 10, 2023Updated 3 years ago
- Codon Optimizer for mRNA Vaccine Design☆26Sep 25, 2024Updated last year
- Multi-Species Codon Optimization Engine☆28Jul 16, 2025Updated 11 months ago
- ☆13Feb 20, 2022Updated 4 years ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- Coming Soon...☆10Mar 14, 2022Updated 4 years ago
- ☆19May 16, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆24Jul 2, 2024Updated last year
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆45Jun 17, 2024Updated 2 years ago
- REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability☆14Dec 16, 2023Updated 2 years ago
- Online solubility prediction tool (streamlit) that runs the top-performing ML model (AqSolPred).☆10Nov 11, 2024Updated last year
- RDKit中文教程☆16Jun 21, 2020Updated 6 years ago
- ☆61May 29, 2025Updated last year
- FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer☆42Oct 9, 2024Updated last year
- ☆94Oct 9, 2024Updated last year
- Knowledge graph enhanced LLM for binding affinity prediction☆14Aug 20, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆83Aug 11, 2024Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆309Dec 16, 2025Updated 6 months ago
- Models, design algorithms, and other software related to Salis lab publications☆37Nov 6, 2024Updated last year
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 4 years ago
- Tutorial on how to use Ginkgo AI embedding APIs for scientific problems☆19Nov 22, 2024Updated last year
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 28, 2026Updated 2 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- Mol-Opt: a toolbox for molecular design☆24Apr 15, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆23Jul 14, 2024Updated last year
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆85Sep 12, 2024Updated last year
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆14Jan 22, 2026Updated 5 months ago
- Computationally Restoring the Potency of a Clinical Antibody☆20Mar 1, 2024Updated 2 years ago
- Flexible analysis of high-content CRISPR screening☆32Mar 6, 2026Updated 3 months ago
- ☆14Apr 10, 2024Updated 2 years ago
- create usable MS-Word web-pages☆14Aug 11, 2025Updated 10 months ago