Code for 5UTR project
☆26May 20, 2023Updated 2 years ago
Alternatives and similar repositories for 5UTR_Optimizer
Users that are interested in 5UTR_Optimizer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆58Jul 3, 2019Updated 6 years ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 3 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆24Jul 2, 2024Updated last year
- ☆24Apr 15, 2024Updated last year
- ☆95Oct 9, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Dec 21, 2018Updated 7 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- ☆16May 22, 2025Updated 10 months ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24May 30, 2023Updated 2 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- Introduction to single-cell RNA-Seq analysis workshop☆15Feb 1, 2017Updated 9 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Needleman-Wunsch Algorithm for global alignment and local alignment☆12Feb 12, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆30Oct 28, 2022Updated 3 years ago
- ☆29Nov 6, 2022Updated 3 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆13Dec 7, 2021Updated 4 years ago
- Analisi dati del COVID 19 in Italia☆11Apr 24, 2020Updated 5 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)☆50Jan 5, 2026Updated 2 months ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 3 years ago
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Nov 23, 2023Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆22Dec 10, 2025Updated 3 months ago
- Deep learning model to predict interactions between proteins and glycans [LEGACY; use glycowork implementation]☆14Aug 16, 2021Updated 4 years ago
- test☆14Nov 13, 2020Updated 5 years ago
- ☆11Jan 15, 2020Updated 6 years ago
- Cross-protein transfer learning for variant effect prediction☆20Sep 13, 2023Updated 2 years ago
- Implementation of deep random forests. Also contains random subspace forests and X-of-N forests.☆11Dec 20, 2022Updated 3 years ago
- Echarts(v5.x | next) components for react.☆11Mar 4, 2021Updated 5 years ago
- ☆14Mar 18, 2016Updated 10 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for Informatics nano course☆11Jan 20, 2020Updated 6 years ago
- Code for the antibody deep learning paper.☆16Feb 28, 2022Updated 4 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Mar 18, 2023Updated 3 years ago
- ☆26Jan 14, 2021Updated 5 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆103Jan 31, 2026Updated last month
- Complete analysis pipeline for PAR-CLIP data☆10May 7, 2015Updated 10 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Oct 6, 2022Updated 3 years ago