zzz2010 / 5UTR_OptimizerLinks
Code for 5UTR project
☆25Updated 2 years ago
Alternatives and similar repositories for 5UTR_Optimizer
Users that are interested in 5UTR_Optimizer are comparing it to the libraries listed below
Sorting:
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆70Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- ☆74Updated last year
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated last week
- HLA-II ligand predictor.☆44Updated 2 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆49Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆80Updated last year
- ☆90Updated 9 months ago
- A visualization software for antibody multi sequence alignment☆18Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 9 months ago
- Multi-class signal peptide prediction and structure decoding model.☆89Updated 5 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆177Updated last year
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- A list of tools on proteomics using deep learning☆97Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆49Updated 6 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated last month
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated 2 weeks ago
- A collection of available Python tools for Proteomics analysis☆58Updated 6 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆82Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆39Updated 10 months ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆27Updated 7 months ago
- A visible neural network model for drug response prediction☆144Updated last year
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆112Updated last year
- HLA-I ligand predictor☆41Updated 6 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆21Updated last year