Alternatives and similar repositories for 5UTR_Optimizer:

Users that are interested in 5UTR_Optimizer are comparing it to the libraries listed below

• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆38Updated last year
• ntranoslab / esm-variants
  ☆70Updated last year
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆36Updated 3 weeks ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 2 years ago
• lulab / OligoFormer
  ☆19Updated 3 weeks ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆17Updated 7 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆64Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆43Updated 5 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆64Updated this week
• hexavier / CUSTOM
  Codon optimizer for tissue-specific expression
  ☆15Updated 4 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆31Updated last month
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 2 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆48Updated 9 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 11 months ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆16Updated 6 months ago
• a96123155 / UTR-LM
  ☆73Updated 3 months ago
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆26Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 5 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆78Updated 2 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆53Updated 2 weeks ago
• DasLab / draw_rna
  Draw RNA secondary structures in python.
  ☆46Updated 4 months ago
• GreiffLab / immuneSIM
  ☆37Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆67Updated 9 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆38Updated 5 years ago
• louzounlab / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 4 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆47Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆66Updated this week
• NKI-AI / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆25Updated 9 months ago