Alternatives and similar repositories for 5UTR_Optimizer

Users that are interested in 5UTR_Optimizer are comparing it to the libraries listed below

• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• ntranoslab / esm-variants
  ☆78Updated 2 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆72Updated 2 years ago
• a96123155 / UTR-LM
  ☆90Updated 11 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆82Updated last year
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆29Updated 3 years ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆20Updated last year
• idekerlab / DrugCell
  A visible neural network model for drug response prediction
  ☆149Updated 2 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆51Updated 6 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 9 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆181Updated last year
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆60Updated 6 years ago
• Superzchen / iLearnPlus
  iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…
  ☆114Updated last year
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆69Updated this week
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆41Updated last year
• Rostlab / ProNA2020
  ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence
  ☆14Updated 5 years ago
• hexavier / CUSTOM
  Codon optimizer for tissue-specific expression
  ☆17Updated 11 months ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated 10 months ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆56Updated 3 years ago
• alchemab / bcr-repertoire-papers
  Collection of papers related to BCR repertoire analyses
  ☆18Updated 3 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆50Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated last week
• Lattice-Automation / icor-codon-optimization
  RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
  ☆69Updated 2 years ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 7 years ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆90Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆73Updated last month
• pgmikhael / protgps
  ☆93Updated 3 months ago