decodebiology / rpkm_rnaseq_countLinks
RPKM for RNASeq counts
☆16Updated 5 years ago
Alternatives and similar repositories for rpkm_rnaseq_count
Users that are interested in rpkm_rnaseq_count are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆57Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Tools for analyzing DNA methylation data☆44Updated 2 weeks ago
- Long read to rMATS☆32Updated 2 years ago
- Evolutionary Transcriptomics with R☆47Updated last week
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- ☆50Updated 4 years ago
- My bioinfo toolbox☆50Updated 11 months ago
- A python package and a set of shell commands to handle GTF files☆50Updated last week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated last year
- ☆33Updated 2 months ago
- Merging paired-end reads and removing adapters☆46Updated 2 months ago
- A catalogue of available long read sequencing data analysis tools☆85Updated 3 weeks ago
- visual analysis of your VCF files☆38Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated last week
- R package for inferring copy number from read depth☆32Updated 3 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 9 months ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆51Updated 7 years ago
- ☆60Updated 6 months ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- ☆45Updated last year
- Powerful statistics for VCF files☆73Updated 2 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 7 months ago