decodebiology / rpkm_rnaseq_countLinks
RPKM for RNASeq counts
☆16Updated 4 years ago
Alternatives and similar repositories for rpkm_rnaseq_count
Users that are interested in rpkm_rnaseq_count are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- ☆50Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Merging paired-end reads and removing adapters☆44Updated 4 months ago
- ☆31Updated last month
- Demultiplexes a fastq.☆45Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆49Updated 2 years ago
- Powerful statistics for VCF files☆70Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆38Updated 5 months ago
- ☆33Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- Tools for analyzing DNA methylation data☆42Updated last week
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- ☆45Updated 8 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆46Updated 2 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated 8 months ago