A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.
☆19Mar 2, 2026Updated this week
Alternatives and similar repositories for pixelator
Users that are interested in pixelator are comparing it to the libraries listed below
Sorting:
- ☆21May 6, 2025Updated 10 months ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆12Sep 30, 2024Updated last year
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Jul 13, 2024Updated last year
- single-cell Contamination Detection and Correction☆17Jan 15, 2025Updated last year
- R package for large-scale CNV analysis from RNA-seq☆19Dec 21, 2023Updated 2 years ago
- ☆18Jul 3, 2022Updated 3 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Feb 11, 2026Updated 3 weeks ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆25Mar 7, 2024Updated 2 years ago
- ☆21Dec 23, 2024Updated last year
- ☆25Aug 24, 2023Updated 2 years ago
- ☆33Jun 4, 2024Updated last year
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- ☆29Nov 15, 2023Updated 2 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated 2 months ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- ☆29Apr 26, 2024Updated last year
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 2 months ago
- ☆11Feb 2, 2026Updated last month
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- Repository for codes for the HBCA paper☆42Mar 17, 2023Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆13Mar 10, 2023Updated 2 years ago
- ☆41Jun 24, 2025Updated 8 months ago
- Explore the Hi-Cs☆11Nov 30, 2025Updated 3 months ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆11Oct 31, 2024Updated last year
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆11Mar 11, 2024Updated last year
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 8 months ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Map large-scale single cells to the exact spatial locations☆16Jun 12, 2025Updated 8 months ago
- IPHOMED☆11Jun 11, 2025Updated 8 months ago