Alternatives and similar repositories for DOSE

Users that are interested in DOSE are comparing it to the libraries listed below

• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆80Updated 2 years ago
• federicomarini / awesome-expression-browser
  😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
  ☆136Updated 10 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 7 months ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆195Updated last year
• YuLab-SMU / GOSemSim
  GO-terms Semantic Similarity Measures
  ☆66Updated last month
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆167Updated 2 months ago
• srp33 / TCGA_RNASeq_Clinical
  ☆61Updated 5 years ago
• iDEP-SDSU / idep
  Integrated Differential Expression and Pathway analysis
  ☆132Updated this week
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 6 years ago
• rezakj / iCellR
  Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…
  ☆123Updated last year
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆97Updated 6 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆118Updated last year
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆140Updated 3 weeks ago
• seandavi / GEOquery
  The bridge between the NCBI Gene Expression Omnibus and Bioconductor
  ☆100Updated 2 weeks ago
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆154Updated 3 weeks ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆96Updated 11 months ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆97Updated 3 years ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆141Updated last week
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆114Updated 2 months ago
• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆61Updated 6 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 9 months ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆96Updated last month
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated 2 years ago
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆94Updated last year
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last year
• hbc / knowledgebase
  recipes that save time
  ☆142Updated 3 weeks ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆121Updated 5 years ago