Alternatives and similar repositories for DOSE:

Users that are interested in DOSE are comparing it to the libraries listed below

• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆83Updated 5 months ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆190Updated last year
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆163Updated 2 years ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆114Updated 7 months ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆138Updated last year
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆162Updated 4 months ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated last month
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆172Updated 4 months ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆76Updated last year
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆121Updated this week
• rezakj / iCellR
  Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…
  ☆122Updated 9 months ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆172Updated 9 months ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆90Updated 2 months ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated last year
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆147Updated 2 years ago
• federicomarini / awesome-expression-browser
  😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
  ☆133Updated 5 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆186Updated last week
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated last week
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆102Updated 8 years ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆147Updated 2 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆108Updated 8 months ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 6 years ago
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆241Updated last month
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆103Updated last year
• mgonzalezporta / TeachingMaterial
  RNA-seq data analysis practical
  ☆61Updated 10 years ago
• vals / umis
  Tools for processing UMI RNA-tag data
  ☆129Updated 2 years ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆101Updated 2 years ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆93Updated 6 months ago