Alternatives and similar repositories for DOSE

Users that are interested in DOSE are comparing it to the libraries listed below

• federicomarini / awesome-expression-browser
  😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
  ☆142Updated 3 months ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆84Updated last week
• wjawaid / enrichR
  An R interface to enrichR
  ☆94Updated last year
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆123Updated last week
• YuLab-SMU / GOSemSim
  GO-terms Semantic Similarity Measures
  ☆67Updated 2 weeks ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆199Updated last week
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆64Updated 2 years ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆122Updated 5 years ago
• rezakj / iCellR
  iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …
  ☆128Updated 2 months ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 7 years ago
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆95Updated last year
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆95Updated 3 weeks ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆168Updated 7 months ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆166Updated 4 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 3 weeks ago
• drisso / SingleCellExperiment
  Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…
  ☆75Updated 7 months ago
• seandavi / GEOquery
  The bridge between the NCBI Gene Expression Omnibus and Bioconductor
  ☆105Updated 2 months ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆100Updated 4 years ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆142Updated 4 months ago
• srp33 / TCGA_RNASeq_Clinical
  ☆62Updated 5 years ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆158Updated last month
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆99Updated last year
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆84Updated 7 years ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• iDEP-SDSU / idep
  Integrated Differential Expression and Pathway analysis
  ☆137Updated 3 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆120Updated 6 months ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last week
• hbctraining / DGE_workshop_salmon
  ☆73Updated 4 years ago
• hbc / knowledgebase
  recipes that save time
  ☆147Updated this week
• BioinformaticsFMRP / TCGAWorkflow
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
  ☆49Updated 2 years ago