Alternatives and similar repositories for DOSE:

Users that are interested in DOSE are comparing it to the libraries listed below

• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆73Updated last year
• rezakj / iCellR
  Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…
  ☆121Updated 6 months ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆116Updated 4 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆112Updated 4 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆176Updated 3 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆81Updated last month
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆95Updated 6 months ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆31Updated 2 years ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆189Updated 10 months ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆84Updated 2 months ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆218Updated 2 months ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆124Updated last month
• ncborcherding / escape
  Easy single cell analysis platform for enrichment
  ☆157Updated last month
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆181Updated this week
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆182Updated last week
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆163Updated last year
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆166Updated last month
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆135Updated this week
• rcastelo / GSVA
  Gene set variation analysis
  ☆208Updated this week
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆161Updated last month
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆118Updated 4 years ago
• drisso / SingleCellExperiment
  Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…
  ☆68Updated 2 months ago
• federicomarini / awesome-expression-browser
  😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
  ☆132Updated 2 months ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆105Updated last year
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆101Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆141Updated 10 months ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆130Updated 10 months ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆94Updated 3 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆89Updated last month
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆173Updated 2 months ago