Disease Ontology Semantic and Enrichment analysis
☆125Feb 22, 2026Updated last week
Alternatives and similar repositories for DOSE
Users that are interested in DOSE are comparing it to the libraries listed below
Sorting:
- Visualization of Functional Enrichment Result☆256Updated this week
- A universal enrichment tool for interpreting omics data☆1,170Feb 22, 2026Updated last week
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- GO-terms Semantic Similarity Measures☆67Jan 20, 2026Updated last month
- ChIP peak Annotation, Comparison and Visualization☆250Nov 4, 2025Updated 3 months ago
- Gene set variation analysis☆231Updated this week
- Utilities for manipulating chromosome names, including modifying them to follow a particular naming style☆33Dec 4, 2025Updated 2 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- Extension of SpatialExperiment with sf☆57Feb 19, 2026Updated last week
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 9 months ago
- R client for the OmniPath web service☆154Feb 12, 2026Updated 2 weeks ago
- MeSH Enrichment and Semantic analyses☆12Dec 23, 2025Updated 2 months ago
- download files in R using wget -c☆16Aug 20, 2025Updated 6 months ago
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- Reactome Pathway Analysis☆44Dec 23, 2025Updated 2 months ago
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 5 years ago
- Code for EpiMap data browser☆14Jun 4, 2024Updated last year
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆310Feb 10, 2026Updated 2 weeks ago
- Fast Gene Set Enrichment Analysis☆433Jan 2, 2026Updated last month
- ☆71May 28, 2025Updated 9 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated 10 months ago
- A container (S4 class) for matrix-like assays☆36Feb 5, 2026Updated 3 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 3 weeks ago
- Clone of the Bioconductor repository for the SingleR package.☆199Updated this week
- Code for the spatialLIBD R/Bioconductor package and shiny app☆109Jan 15, 2026Updated last month
- Easy single cell analysis platform for enrichment☆214Jan 4, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 2 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.☆338Updated this week
- Spatial Transcriptomics Capture Location Deconvolution☆201Oct 20, 2025Updated 4 months ago
- ☆33Feb 6, 2026Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated last week
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆251Jan 10, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated 3 weeks ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆245Updated this week
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 4 months ago