jernst98 / ChromHMMLinks
☆88Updated last month
Alternatives and similar repositories for ChromHMM
Users that are interested in ChromHMM are comparing it to the libraries listed below
Sorting:
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 7 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- ☆117Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- Links to ATAC-seq analysis tools☆69Updated 4 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 9 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- ☆75Updated 4 months ago
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- ☆30Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆51Updated 2 years ago
- Tutorial Website☆59Updated 4 years ago
- release version☆54Updated 3 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- AQUAS TF and histone ChIP-seq pipeline☆110Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆139Updated last year