hms-dbmi / hic-data-analysis-bootcampLinks
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
☆203Updated 7 years ago
Alternatives and similar repositories for hic-data-analysis-bootcamp
Users that are interested in hic-data-analysis-bootcamp are comparing it to the libraries listed below
Sorting:
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated last month
- ☆137Updated 6 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆145Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆224Updated this week
- ATAC-seq peak-calling and QC analysis pipeline☆208Updated last month
- ☆154Updated 2 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆192Updated 2 months ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Detecting sites of genomic enrichment☆193Updated 2 years ago
- Application for making ENCODE Blacklists☆317Updated 4 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆279Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆259Updated 6 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆166Updated 3 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆236Updated 2 months ago
- ☆94Updated 3 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- ☆149Updated 3 months ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated last month
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆283Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆236Updated this week
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆151Updated last year
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- FAN-C: Framework for the ANalysis of C-like data☆118Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated this week
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆189Updated 5 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆153Updated last year
- ☆272Updated 9 months ago
- Step-by-step analysis pipeline for RNA-seq data☆140Updated last year
- ☆135Updated 6 years ago