keleslab / FreeHiC
FreeHi-C pipeline for high fidelity Hi-C data simulation.
☆11Updated 3 years ago
Alternatives and similar repositories for FreeHiC:
Users that are interested in FreeHiC are comparing it to the libraries listed below
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆28Updated this week
- ☆36Updated 5 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆15Updated 3 months ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆11Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆15Updated 3 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆37Updated last year
- ☆20Updated 4 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- ☆21Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- A toolkit for analyzing architectural stripes☆19Updated 3 months ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆18Updated 5 years ago
- ☆16Updated 4 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 11 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated 9 months ago
- Cooler demo using a Jupyter notebook Binder☆17Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 8 months ago