keleslab / FreeHiCLinks
FreeHi-C pipeline for high fidelity Hi-C data simulation.
☆11Updated 3 years ago
Alternatives and similar repositories for FreeHiC
Users that are interested in FreeHiC are comparing it to the libraries listed below
Sorting:
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- ☆37Updated 5 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 9 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- ☆13Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆15Updated 3 years ago
- ☆21Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Processing and plotting tools for genomics data☆20Updated last month
- ☆22Updated last year
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- ☆19Updated 2 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- ☆22Updated 6 months ago
- ☆36Updated 2 years ago
- A toolkit for analyzing architectural stripes☆19Updated 6 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 9 months ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆16Updated this week
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- Architectural stripe detection from 3D genome conformation data☆17Updated last year