keleslab / FreeHiCLinks
FreeHi-C pipeline for high fidelity Hi-C data simulation.
☆12Updated 4 years ago
Alternatives and similar repositories for FreeHiC
Users that are interested in FreeHiC are comparing it to the libraries listed below
Sorting:
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- ☆37Updated 6 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆22Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆37Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last week
- ☆38Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- R package to evaluate reproducibility of Hi-C data☆10Updated 2 years ago
- ☆24Updated 11 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ☆22Updated 5 years ago
- ☆13Updated 3 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Updated last year
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year
- ☆22Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- ☆20Updated 3 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago