keleslab / FreeHiC
FreeHi-C pipeline for high fidelity Hi-C data simulation.
☆11Updated 3 years ago
Related projects: ⓘ
- HiC for copy Number variation and Translocation detection☆36Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆39Updated 2 years ago
- ☆34Updated 5 years ago
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 5 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated 4 years ago
- Single-cell Hi-C data analysis toolbox☆23Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- HiCtrans is a pipeline to call translocations from Hi-C data☆15Updated 2 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- ☆31Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆22Updated 2 weeks ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆18Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- ☆19Updated 4 years ago
- R package to evaluate the reproducibility of Hi-C data☆25Updated last year
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 2 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆14Updated 10 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆17Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆35Updated 7 months ago
- ☆10Updated 4 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆14Updated 2 years ago
- ☆19Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated last year
- ☆14Updated last year
- ☆11Updated 4 months ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆13Updated last year
- ☆15Updated 3 years ago