rchereji / plot2DO
A tool to assess the quality and distribution of genomic data
☆16Updated 3 years ago
Alternatives and similar repositories for plot2DO:
Users that are interested in plot2DO are comparing it to the libraries listed below
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- IDR☆31Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ☆17Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 3 months ago
- A preprocessing and QC pipeline for HiChIP data☆38Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆70Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- binned motif enrichment analysis and visualisation☆40Updated last month
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago