Alternatives and similar repositories for plot2DO

Users that are interested in plot2DO are comparing it to the libraries listed below

• simonvh / fluff
  Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…
  ☆71Updated last year
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆67Updated 5 years ago
• christacaggiano / celfie
  cfDNA cell type of origin estimation
  ☆31Updated last year
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 4 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆23Updated 6 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 2 months ago
• ParkerLab / atactk
  A toolkit for working with ATAC-seq data.
  ☆24Updated last year
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆43Updated 3 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 11 months ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆54Updated 4 years ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆36Updated 4 years ago
• aryeelab / hichipper
  A preprocessing and QC pipeline for HiChIP data
  ☆40Updated 3 years ago
• pinellolab / haystack_bio
  Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆47Updated 3 years ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆90Updated 5 months ago
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆22Updated 5 years ago
• YosefLab / ImpulseDE2
  ☆38Updated 2 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 4 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆30Updated 5 months ago
• AstraZeneca-NGS / disambiguate
  Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
  ☆31Updated 7 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆41Updated last month
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• rcavalcante / annotatr
  Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…
  ☆27Updated 2 months ago
• Xinglab / PEGASAS
  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
  ☆20Updated 3 years ago
• SamBuckberry / RUN-WGCNA
  Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
  ☆28Updated 10 years ago
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆50Updated 6 years ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago