rchereji / plot2DOLinks
A tool to assess the quality and distribution of genomic data
☆17Updated 4 years ago
Alternatives and similar repositories for plot2DO
Users that are interested in plot2DO are comparing it to the libraries listed below
Sorting:
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- binned motif enrichment analysis and visualisation☆43Updated 3 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- ☆41Updated 3 years ago
- ☆16Updated 8 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- ATAC-seq lab for BIOINF545☆24Updated 9 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- An R interface to the MEME Suite☆53Updated 5 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago