BMILAB / scAPAtrap
☆16Updated last year
Alternatives and similar repositories for scAPAtrap:
Users that are interested in scAPAtrap are comparing it to the libraries listed below
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- ☆29Updated 4 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year
- ☆45Updated 5 months ago
- R package of CSOmap(developing☆14Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆28Updated 2 years ago
- ☆31Updated 8 months ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆31Updated 5 years ago
- ☆27Updated 3 years ago
- single-cell clustering based on alternative splicing landscapes☆16Updated 9 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- ☆12Updated 6 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated 11 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- ☆15Updated 7 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- ☆18Updated 3 months ago
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Network construction Algorithm☆20Updated 4 months ago
- A pipeline for scRNA-seq data analysis☆12Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated last month