BMILAB / scAPAtrapLinks
☆21Updated last year
Alternatives and similar repositories for scAPAtrap
Users that are interested in scAPAtrap are comparing it to the libraries listed below
Sorting:
- ☆49Updated 10 months ago
- ☆32Updated 5 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- ☆8Updated 2 years ago
- ☆34Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- ☆22Updated last year
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- scWGCNA☆61Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆38Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated 2 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago