Hua-CM / HuaSmallToolsLinks
Some bioinformic domestic scripts.
☆34Updated 2 years ago
Alternatives and similar repositories for HuaSmallTools
Users that are interested in HuaSmallTools are comparing it to the libraries listed below
Sorting:
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last month
- Workflow for Building Microsynteny Networks☆55Updated 2 years ago
- NLR annotation tool☆27Updated last year
- GO KEGG annotation☆35Updated 2 years ago
- Genome annotation pipeline☆59Updated 11 months ago
- Documentation for Evolview☆28Updated 3 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆21Updated 3 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆34Updated this week
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated this week
- BamDeal: a comprehensive toolkit for bam manipulation☆14Updated 2 years ago
- NLR-Annotator upload☆66Updated last year
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Updated 3 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆29Updated last year
- ☆38Updated 5 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆42Updated 3 weeks ago
- ☆79Updated 10 months ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆27Updated 3 years ago
- ☆14Updated 4 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆48Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆40Updated 8 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆50Updated 5 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated last week
- collection of bioinformatic scripts☆31Updated last year
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆54Updated 11 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- A novel genome assembly pipeline based on deep learning☆62Updated 6 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 3 weeks ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆61Updated 5 years ago