ZhengXia / dapars
DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)
☆47Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for dapars
- Tutorial Website☆53Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆44Updated 7 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last month
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆40Updated 7 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- ☆30Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- Allele-specific alignment sorting☆53Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- ☆37Updated last year
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆46Updated 5 years ago
- ☆65Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆62Updated last week
- ATAC-seq snakemake pipeline☆83Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- Links to ATAC-seq analysis tools☆50Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆43Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago
- Updated DANPOS2 to work with python3☆20Updated 8 months ago