flyseq / drosophila_assembly_pipelines
Pipelines for Drosophila genome assembly and analysis
☆15Updated 3 years ago
Alternatives and similar repositories for drosophila_assembly_pipelines
Users that are interested in drosophila_assembly_pipelines are comparing it to the libraries listed below
Sorting:
- Killifish genomics scripts☆12Updated 4 years ago
- Scripts to convert between file formats for various analyses☆16Updated last week
- ☆21Updated 5 years ago
- The IntroBlocker ancestry inference algorithm☆11Updated last year
- ☆25Updated 3 months ago
- ☆28Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 2 months ago
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆18Updated 2 years ago
- ☆32Updated 4 years ago
- ☆24Updated 2 years ago
- read and analyse RepeatMasker output☆24Updated last year
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated last month
- HyPhy standalone analyses☆43Updated last month
- A pipeline for assemble chroloplast genome using short/long reads☆9Updated 3 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆20Updated last week
- ☆27Updated 4 months ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- ☆27Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆34Updated 7 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year