☆13Mar 13, 2026Updated last week
Alternatives and similar repositories for GeneCooc
Users that are interested in GeneCooc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package for reference mapping and nice visualization☆24Dec 16, 2025Updated 3 months ago
- ☆94Aug 10, 2025Updated 7 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆27Jul 17, 2025Updated 8 months ago
- ☆22Nov 9, 2023Updated 2 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆23Apr 3, 2025Updated 11 months ago
- Methods for decontamination of single cell data☆61Feb 16, 2025Updated last year
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Jul 24, 2025Updated 8 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated 2 years ago
- Useful functions to make your scRNA-seq plot more cool!☆380Updated this week
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Feb 28, 2022Updated 4 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- ☆34Jun 1, 2022Updated 3 years ago
- Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.11…☆17Jan 24, 2026Updated 2 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Mar 11, 2026Updated last week
- EDGE☆15Aug 30, 2020Updated 5 years ago
- ☆35Aug 26, 2022Updated 3 years ago
- DEGAS is an R package that can be used to prioritize cells in relation to disease.☆13Nov 6, 2024Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆19Dec 1, 2024Updated last year
- ☆19Dec 15, 2023Updated 2 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆15Mar 1, 2026Updated 3 weeks ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Jan 6, 2021Updated 5 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Oct 6, 2025Updated 5 months ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16May 26, 2025Updated 9 months ago
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated last year
- pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq☆16Jun 20, 2022Updated 3 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆64Mar 18, 2024Updated 2 years ago
- CELLama Project☆23Nov 15, 2025Updated 4 months ago
- ☆114Sep 16, 2020Updated 5 years ago
- CRUK Bioinformatics Workshop September 2017☆18Sep 21, 2017Updated 8 years ago
- Differential expression analysis for single-cell RNA-seq data☆14Feb 15, 2019Updated 7 years ago
- Explainable Multilayer Graph Neural Network for Cancer Gene Prediction☆21Nov 3, 2023Updated 2 years ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆17Jan 16, 2026Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆78Aug 17, 2024Updated last year
- Supplementary files and notebooks to recreate figures.☆21Aug 12, 2025Updated 7 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆22Jun 14, 2024Updated last year
- ☆10Jul 16, 2021Updated 4 years ago