mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis
☆17Apr 8, 2026Updated 6 months ago
Alternatives and similar repositories for mcRigor
Users that are interested in mcRigor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package containing metrics for evaluating subpopulation identification in clusterings, embeddings, graphs and space.☆11Jan 23, 2026Updated 9 months ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 8 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 11 months ago
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆29Jul 27, 2026Updated 3 months ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆51May 14, 2025Updated last year
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Oct 12, 2026Updated 2 weeks ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- ☆14Mar 13, 2026Updated 7 months ago
- Cell Interaction by Multiplet Sequencing (CIM-Seq) uses computational deconvolution of RNA-seq data from partially dissociated tissue to …☆11Jan 20, 2022Updated 4 years ago
- Turning the quasi-UMI method into a bioconductor package☆11Mar 3, 2021Updated 5 years ago
- R Interface to the Metabolights REST API☆11Jun 10, 2026Updated 4 months ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Oct 7, 2026Updated 3 weeks ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆18Oct 4, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 11 months ago
- ☆10Dec 19, 2024Updated last year
- single-cell Contamination Detection and Correction☆19Jan 15, 2025Updated last year
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 7 months ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆12Nov 10, 2023Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- Developmental Spatiotemporal Optimal Transport☆15Mar 19, 2025Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Sep 2, 2024Updated 2 years ago
- ☆14Apr 20, 2023Updated 3 years ago
- Denoised Embedding Manifold Preservation☆12May 6, 2020Updated 6 years ago
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 5 months ago
- Alignability testing and integration of single-cell data☆24Feb 29, 2024Updated 2 years ago
- Feature Selection in scRNA-seq☆11Sep 9, 2021Updated 5 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- MoChA WDL pipelines☆12Aug 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆56Oct 31, 2024Updated last year
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆30Nov 2, 2024Updated last year
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Oct 13, 2026Updated 2 weeks ago
- ☆13Jan 8, 2026Updated 9 months ago
- ☆11Sep 22, 2026Updated last month
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆25Jan 31, 2026Updated 8 months ago
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago