ratschlab / DeepSpotLinks
DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images
☆53Updated 2 weeks ago
Alternatives and similar repositories for DeepSpot
Users that are interested in DeepSpot are comparing it to the libraries listed below
Sorting:
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆42Updated 2 months ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆30Updated 3 months ago
- ☆34Updated 3 weeks ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Accessible and interoperable whole slide image analysis☆124Updated last week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆57Updated last year
- ☆55Updated 2 years ago
- ☆55Updated last year
- ☆55Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆51Updated this week
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆137Updated 7 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 3 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- ☆45Updated 3 years ago
- ☆38Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 2 months ago
- Foundation Model for Multiplex Spatial Proteomic Images☆69Updated 2 months ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆26Updated 8 months ago
- ☆33Updated 4 years ago
- Reproducing the experiments of the DestVI paper☆19Updated 3 years ago
- ☆84Updated 2 months ago
- ☆12Updated 2 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 4 months ago
- Her2 Breast Cancer Project☆83Updated 2 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- ☆22Updated 2 years ago
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆103Updated last month
- ☆52Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago