Alternatives and similar repositories for DeepSpot

Users that are interested in DeepSpot are comparing it to the libraries listed below

• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆44Updated 6 months ago
• GlastonburyC / RNAPath
  Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
  ☆32Updated 8 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆63Updated last year
• AI4SCR / ATHENA
  ☆35Updated last week
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆171Updated 2 weeks ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆56Updated 3 years ago
• daviddaiweizhang / istar
  ☆154Updated last year
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆37Updated 3 years ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago
• suinleelab / contrastiveVI
  ☆60Updated last year
• uhlerlab / cross-modal-autoencoders
  ☆56Updated 3 years ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆128Updated 6 months ago
• tanlabcode / CelloType
  ☆59Updated 10 months ago
• bowang-lab / scGPT-spatial
  ☆121Updated 10 months ago
• Zaoqu-Liu / MOFS
  Multimodality Fusion Subtyping (Nature Communications)
  ☆30Updated 8 months ago
• Weiqin-Zhao / Hist2Cell
  ☆16Updated last month
• ElementoLab / utag
  ☆40Updated last year
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 4 months ago
• snap-stanford / stellar
  ☆70Updated 2 years ago
• jianhuupenn / TESLA
  Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
  ☆63Updated last year
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆95Updated 2 weeks ago
• CharlieCheckpt / pacpaint
  ☆13Updated 2 years ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆22Updated 3 years ago
• almaan / her2st
  Her2 Breast Cancer Project
  ☆90Updated 3 years ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆58Updated 7 months ago
• micrisor / NAT-ML
  ☆35Updated 4 years ago
• tmonjo / DeepSpaCE
  ☆22Updated 3 years ago
• SydneyBioX / HEtoSGEBench
  ☆16Updated 10 months ago