DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.
☆66Mar 16, 2026Updated this week
Alternatives and similar repositories for DeepSpot
Users that are interested in DeepSpot are comparing it to the libraries listed below
Sorting:
- ☆49May 19, 2025Updated 10 months ago
- [NeurIPS 2025] Few-Shot Learning from Gigapixel Images via Hierarchical Vision-Language Alignment and Modeling☆26Dec 16, 2025Updated 3 months ago
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆13May 10, 2025Updated 10 months ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆47Apr 15, 2025Updated 11 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆49Jun 4, 2025Updated 9 months ago
- ☆47Apr 8, 2025Updated 11 months ago
- ☆21Jan 8, 2025Updated last year
- Cross-attention-based cell-cell interaction inference from ST data.☆18Mar 11, 2026Updated last week
- ViDRiP-LLaVA: A Dataset and Benchmark for Diagnostic Reasoning from Pathology Videos☆23May 21, 2025Updated 10 months ago
- Dataloader for common proteomics search engine outputs into AnnData format☆14Nov 24, 2025Updated 3 months ago
- ☆55Mar 28, 2025Updated 11 months ago
- [CVPR 2025] Official Repo of Paper "FOCUS: Knowledge-enhanced Adaptive Visual Compression for Few-shot Whole Slide Image Classification"☆36Jun 6, 2025Updated 9 months ago
- Code for the THItoGene☆28Apr 9, 2025Updated 11 months ago
- ☆14May 28, 2025Updated 9 months ago
- Single cell proteomics data processing☆30Feb 9, 2026Updated last month
- [PR 2025] Code for UMPIRE☆13Mar 10, 2025Updated last year
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆20Mar 9, 2026Updated last week
- Deep learning on histopathology images.☆142Sep 8, 2021Updated 4 years ago
- PyTorch implementation of HisToGene☆52Nov 30, 2021Updated 4 years ago
- ☆66Sep 16, 2025Updated 6 months ago