☆30Mar 16, 2023Updated 3 years ago
Alternatives and similar repositories for SBGNview
Users that are interested in SBGNview are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data visualization on metabolic pathway maps.☆12Apr 7, 2020Updated 6 years ago
- pathway based data integration and visualization☆52Mar 28, 2025Updated last year
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 5 months ago
- Reproducible GSEA Benchmarking☆14May 14, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Mar 7, 2020Updated 6 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- ☆15Aug 6, 2025Updated last year
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 8 months ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- An R/shiny widget for cytoscape.js☆97Aug 6, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Oct 23, 2024Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆71Sep 3, 2026Updated last month
- Kinase Activity Predictions from shotgun proteomics☆13Apr 18, 2017Updated 9 years ago
- defusion☆14Aug 24, 2021Updated 5 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆18Jan 7, 2020Updated 6 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 5 years ago
- Integrating zingeR with ZINB-WaVE weights☆27Feb 15, 2018Updated 8 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Divergence time estimation in the complex history of gene family evolution☆11Updated this week
- eHive pipeline to build pairwise Oxford plots☆12Aug 11, 2019Updated 7 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Create KEGG.db Package☆68Jan 29, 2026Updated 9 months ago
- Scripts and how-tos for comparative genomics work.☆10Apr 25, 2023Updated 3 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29May 15, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- base documentation site for Singularity software☆27Feb 15, 2022Updated 4 years ago
- Fast and frugal disk based k-mer counter☆15Apr 1, 2021Updated 5 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆21Jun 10, 2025Updated last year
- ☆16Jul 7, 2025Updated last year
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 7 months ago
- ☆13Jan 8, 2026Updated 9 months ago
- R package for High dimensional data analysis and integration with O2PLS!☆38Jul 18, 2025Updated last year