IARCbioinfo / RNAseq-nfLinks
RNAseq analysis pipeline
☆26Updated 3 years ago
Alternatives and similar repositories for RNAseq-nf
Users that are interested in RNAseq-nf are comparing it to the libraries listed below
Sorting:
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 4 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- ⛏ HLA predictions from NGS shotgun data☆54Updated 4 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated last week
- ☆21Updated 3 weeks ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- ☆46Updated 5 years ago
- Tumor Mutational Burden☆61Updated 2 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- Python module and utility programs for working with GFF files☆32Updated 4 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 3 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆52Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- List of IARC bioinformatics pipelines and resources☆53Updated 2 months ago
- A software for calculating telomere length☆71Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago