IARCbioinfo / RNAseq-nfLinks
RNAseq analysis pipeline
☆26Updated 3 years ago
Alternatives and similar repositories for RNAseq-nf
Users that are interested in RNAseq-nf are comparing it to the libraries listed below
Sorting:
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- ☆21Updated last week
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- ⛏ HLA predictions from NGS shotgun data☆53Updated last month
- ☆46Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- Python module and utility programs for working with GFF files☆32Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- A software for calculating telomere length☆70Updated 6 years ago
- Tumor Mutational Burden☆61Updated 10 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆78Updated 11 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆53Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- ENCODE long read RNA-seq pipeline☆49Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Updated 8 months ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆46Updated 2 years ago
- Tools for analyzing DNA methylation data☆42Updated last week
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- QDNAseq bin annotation for hg38☆16Updated 3 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆48Updated this week
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆25Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year