TIBHannover / BacDiveRLinks
Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.
☆12Updated 3 years ago
Alternatives and similar repositories for BacDiveR
Users that are interested in BacDiveR are comparing it to the libraries listed below
Sorting:
- An open database of vertebrate-virus interactions☆41Updated this week
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- Simple R utilities for working with HMMER☆20Updated 11 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- Code to run the shiny functions for the MASAME suite☆28Updated 5 years ago
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆36Updated last month
- R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities☆20Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- QIIME 2 plugin wrapping DADA2☆21Updated this week
- Microbial community analysis tools in R☆22Updated 3 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆14Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- diversity estimation under ecological networks☆84Updated last month
- Working with the outputs of sourmash in R☆27Updated last year
- microbiome data simulation package☆22Updated last month
- Species richness with high diversity☆67Updated 3 weeks ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆13Updated 5 months ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- micca - MICrobial Community Analysis☆20Updated 5 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- A tool for agile functional analysis of shotgun metagenomic data☆25Updated 11 months ago
- functions for analyzing phyloseq data☆28Updated 6 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 3 weeks ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆24Updated 4 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year