Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.
☆12May 28, 2022Updated 3 years ago
Alternatives and similar repositories for BacDiveR
Users that are interested in BacDiveR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Feb 5, 2026Updated 2 months ago
- ☆11Mar 1, 2025Updated last year
- A synthesis of bacterial and archaeal phenotypic trait data☆35Nov 9, 2023Updated 2 years ago
- KBase distribution module for RASTtk.☆13Sep 14, 2020Updated 5 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Adblock/uBlock filter list for clickbait and distractions (News sites hate this one weird trick!)☆13Jan 20, 2020Updated 6 years ago
- Print barcodes in R☆10Oct 27, 2020Updated 5 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 10 months ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 2 years ago
- An R interface to write OpenCL functions☆11Mar 15, 2022Updated 4 years ago
- Exports the database automatically☆15Nov 14, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple script to display stuff on a world map with R and ggplot☆17Feb 17, 2026Updated last month
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆28Apr 28, 2025Updated 11 months ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- resources collected by the mentoring committee for instructors☆12Apr 6, 2022Updated 4 years ago
- 10 Git problems & how to solve them☆18Feb 11, 2019Updated 7 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 2 years ago
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 5 months ago
- mbImpute: an accurate and robust imputation method for microbiome data☆11Aug 19, 2021Updated 4 years ago
- MiGA: Microbial Genomes Atlas☆33Mar 19, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An attempt to turn copy and pasting into linking☆13Jun 1, 2021Updated 4 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Mar 18, 2026Updated 3 weeks ago
- Scanomatic☆11Oct 12, 2023Updated 2 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- ☆21Jul 12, 2016Updated 9 years ago
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 3 years ago
- R bindings to IPFS☆11Mar 23, 2017Updated 9 years ago
- Helper script for bioconductor/bioconductor_docker☆13Mar 13, 2026Updated last month
- R client for the Pangaea database☆25Jan 17, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Community stuff – currently including release notes, but more coming soon.☆18Apr 14, 2023Updated 3 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆14Mar 27, 2026Updated 2 weeks ago
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 6 years ago
- Automatically share WordPress posts on diaspora*☆14Dec 3, 2024Updated last year
- Spatial Analysis Toolbox is a QGIS Plugin☆14Jun 6, 2023Updated 2 years ago
- ☆19Jan 6, 2023Updated 3 years ago