pachterlab / LP_2021
☆46Updated 10 months ago
Alternatives and similar repositories for LP_2021:
Users that are interested in LP_2021 are comparing it to the libraries listed below
- ☆32Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 8 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆59Updated 4 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆44Updated 11 months ago
- ☆35Updated 2 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆36Updated last month
- ☆49Updated 6 years ago
- ☆67Updated 9 months ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated this week
- Capybara: A computational tool to measure cell identity and fate transitions☆57Updated 2 years ago
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆67Updated 2 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆43Updated last month
- ☆30Updated 6 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated 3 weeks ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆39Updated last year
- R package for pathway analysis in scRNA-seq data☆69Updated 5 months ago
- Single Cell Cluster Evaluation☆87Updated 3 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆39Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- R implementation of GeneTrajectory☆51Updated 10 months ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆55Updated this week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated last week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- Latent Embedding Multivariate Regression☆86Updated 2 months ago
- ☆59Updated 5 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆45Updated 3 months ago