☆54Jan 15, 2026Updated 6 months ago
Alternatives and similar repositories for LP_2021
Users that are interested in LP_2021 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 7 months ago
- ☆29Jan 4, 2024Updated 2 years ago
- ☆20May 1, 2023Updated 3 years ago
- ☆21Dec 23, 2024Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆103Dec 11, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆17Apr 15, 2025Updated last year
- ☆28Jan 25, 2022Updated 4 years ago
- ☆12Aug 30, 2024Updated last year
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated 3 weeks ago
- Raman2RNA code base.☆16Sep 8, 2023Updated 2 years ago
- ☆12Jun 11, 2023Updated 3 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆34Jul 13, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- "Orchestrating Spatial Transcriptomics Analysis with Bioconductor" (OSTA) online book☆115Jul 11, 2026Updated 2 weeks ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Tutorial Website☆67Feb 1, 2021Updated 5 years ago
- Reproducing result from the paper☆34May 12, 2021Updated 5 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- DeepCell Kiosk Distribution for Kubernetes on GKE and AWS☆37Jul 12, 2023Updated 3 years ago
- Tools for analyzing Slide-seq data☆32Oct 30, 2023Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆473Jan 22, 2026Updated 6 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 3 years ago
- This repository will host a (continously updated) list of various deep learning methods used in different stages of spatial transcriptomi…☆44Updated this week
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆210Oct 20, 2025Updated 9 months ago
- ☆64Jul 6, 2021Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆49Jun 3, 2026Updated last month
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆193Mar 27, 2025Updated last year
- Splits fastq files evenly☆24Aug 19, 2020Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 6 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- ☆13Apr 16, 2026Updated 3 months ago