pachterlab / LP_2021Links
☆47Updated 2 weeks ago
Alternatives and similar repositories for LP_2021
Users that are interested in LP_2021 are comparing it to the libraries listed below
Sorting:
- ☆50Updated 7 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆42Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 11 months ago
- ☆40Updated 5 months ago
- ☆56Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆62Updated last week
- ☆32Updated 9 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆74Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 4 months ago
- Latent Embedding Multivariate Regression☆90Updated 6 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- iterative clustering pipeline of big single cell datasets.☆31Updated 3 weeks ago
- An R package for performing cell typing in SMI and other single cell data☆37Updated 2 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆74Updated 2 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 4 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 3 weeks ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 7 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆74Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆38Updated 2 weeks ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆74Updated 9 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- ☆37Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- ☆44Updated this week
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year