modsim / FluxML
A Universal Modeling Language for Metabolic Flux Analysis
☆10Updated last month
Alternatives and similar repositories for FluxML:
Users that are interested in FluxML are comparing it to the libraries listed below
- A python toolbox for 13C metabolic flux analysis☆19Updated 4 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Efficient random sampling for COBRA models☆13Updated 3 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 4 months ago
- The consensus GEM for Saccharomyces cerevisiae☆98Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆68Updated 2 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated 3 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆39Updated 3 months ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated last month
- The generic genome-scale metabolic model of Homo sapiens☆101Updated this week
- D3.js based visualizations of cobrapy metabolic models☆44Updated 4 years ago
- The BiGG Models website server☆80Updated 5 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆23Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- Enzyme-constrained genome-scale models in python☆25Updated last year
- memote – the genome-scale metabolic model test suite☆129Updated last year
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 4 months ago
- Symbolic Kinetic Models with Python☆30Updated 3 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 2 weeks ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆47Updated last month
- BRENDA parser in python☆21Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆114Updated 2 years ago
- JBEI Quantitative Metabolic Modeling library☆12Updated 4 years ago
- ☆10Updated last year
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆39Updated 2 weeks ago
- ☆10Updated 6 years ago
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Updated last year
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆105Updated 3 weeks ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 2 weeks ago