modsim / FluxMLLinks
A Universal Modeling Language for Metabolic Flux Analysis
☆12Updated 8 months ago
Alternatives and similar repositories for FluxML
Users that are interested in FluxML are comparing it to the libraries listed below
Sorting:
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- A python toolbox for 13C metabolic flux analysis☆23Updated 4 months ago
- cameo - computer aided metabolic engineering & optimization☆121Updated 3 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- The consensus GEM for Saccharomyces cerevisiae☆113Updated last week
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆41Updated 4 months ago
- Efficient random sampling for COBRA models☆14Updated 4 years ago
- Release of the whole cell E. coli model.☆72Updated 11 months ago
- Python Environment for Modeling and Simulating Biological Systems☆128Updated 3 weeks ago
- The generic genome-scale metabolic model of Homo sapiens☆122Updated 2 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- The BiGG Models website server☆85Updated 6 years ago
- Symbolic Kinetic Models with Python☆32Updated 5 months ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last week
- Python framework for Systems Biology modeling☆188Updated 3 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated 3 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆48Updated 5 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆15Updated 8 months ago
- memote – the genome-scale metabolic model test suite☆143Updated 3 months ago
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆269Updated this week
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 4 months ago
- A container for all enzyme constrained models created by GECKO.☆14Updated 3 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆141Updated last month
- BRENDA parser in python☆22Updated 3 years ago
- ☆10Updated last year
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 2 months ago
- Enzyme-constrained genome-scale models in python☆29Updated 2 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 9 months ago