modsim / FluxML
A Universal Modeling Language for Metabolic Flux Analysis
☆11Updated 2 months ago
Alternatives and similar repositories for FluxML:
Users that are interested in FluxML are comparing it to the libraries listed below
- A python toolbox for 13C metabolic flux analysis☆19Updated 5 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 5 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Efficient random sampling for COBRA models☆13Updated 3 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated this week
- The consensus GEM for Saccharomyces cerevisiae☆99Updated 2 months ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 3 months ago
- BRENDA parser in python☆21Updated 2 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆23Updated 2 years ago
- The BiGG Models website server☆81Updated 5 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆69Updated 4 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆51Updated last week
- D3.js based visualizations of cobrapy metabolic models☆45Updated 4 years ago
- The generic genome-scale metabolic model of Homo sapiens☆106Updated this week
- cameo - computer aided metabolic engineering & optimization☆114Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆39Updated 3 weeks ago
- memote – the genome-scale metabolic model test suite☆130Updated last year
- Symbolic Kinetic Models with Python☆30Updated this week
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆40Updated this week
- Release of the whole cell E. coli model.☆63Updated 2 months ago
- ☆10Updated 6 years ago
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Updated last month
- JBEI Quantitative Metabolic Modeling library☆12Updated 5 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 6 months ago
- A Python framework for structural systems biology☆107Updated 4 years ago
- ReFramed: metabolic modeling package☆57Updated 6 months ago
- ☆10Updated last year
- Enzyme-constrained genome-scale models in python☆25Updated last year