Alternatives and similar repositories for FluxML

Users that are interested in FluxML are comparing it to the libraries listed below

• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆22Updated 9 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated 9 months ago
• klamt-lab / autopacmen
  Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
  ☆14Updated 3 months ago
• jensenlab / gapsplit
  Efficient random sampling for COBRA models
  ☆13Updated 3 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 3 months ago
• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆13Updated 2 years ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆109Updated 2 months ago
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆33Updated 3 weeks ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆74Updated last month
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆39Updated 5 months ago
• leilahsn / FastKnock
  ☆9Updated last year
• EPFL-LCSB / etfl
  ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
  ☆16Updated 10 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆116Updated 2 years ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆12Updated 2 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆55Updated 4 months ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆133Updated last year
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆117Updated last month
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated last month
• DD-DeCaF / tutorials
  Teaching materials for cobrapy, cameo, escher and DD-DeCaF
  ☆24Updated 2 years ago
• JBEI / jqmm
  JBEI Quantitative Metabolic Modeling library
  ☆12Updated 5 years ago
• eladnoor / equilibrator
  ☆10Updated 7 years ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated last month
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 4 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• maranasgroup / Optimization_Methods_in_Metabolic_Networks
  Examples for Optimization Methods in Metabolic Networks (ISBN: 978-1-119-02849-9)
  ☆7Updated 7 years ago
• matthiaskoenig / brendapy
  BRENDA parser in python
  ☆22Updated 3 years ago