Yu-sysbio / Tutorials-of-metabolic-modeling
代谢网络模型构建和使用实操
☆26Updated 2 years ago
Alternatives and similar repositories for Tutorials-of-metabolic-modeling:
Users that are interested in Tutorials-of-metabolic-modeling are comparing it to the libraries listed below
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated last week
- BGC Detection and Classification Using Deep Learning☆140Updated last year
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆108Updated 3 months ago
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 2 months ago
- snakemake pipeline for creating trees from sequence sets☆76Updated last month
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆124Updated 4 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆163Updated last week
- The consensus GEM for Saccharomyces cerevisiae☆108Updated 3 weeks ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆152Updated last year
- Models, design algorithms, and other software related to Salis lab publications☆30Updated 5 months ago
- ☆20Updated 2 years ago
- ☆83Updated 2 years ago
- a pipeline to build similarity maps of protein space☆33Updated 4 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- UniProt Id Mapping through API☆31Updated 6 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated last month
- The generic genome-scale metabolic model of Homo sapiens☆110Updated this week
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆104Updated 7 months ago
- ☆29Updated 3 years ago
- ☆21Updated this week
- MMseqs2 app to run on your workstation or servers☆77Updated this week
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated 2 months ago
- Feature map and function annotation of Proteins☆33Updated 10 months ago
- Python package for building and analyzing models using ModelSEED☆22Updated this week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆36Updated 2 months ago
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆107Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆100Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆55Updated 4 years ago