Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam
☆14Jun 30, 2019Updated 6 years ago
Alternatives and similar repositories for Systems_Biology_FBA_tutorial
Users that are interested in Systems_Biology_FBA_tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Oct 4, 2024Updated last year
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆21Jun 26, 2023Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆50Mar 10, 2020Updated 6 years ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Python package for building and analyzing models using ModelSEED☆27Feb 11, 2026Updated 3 months ago
- ☆10Dec 15, 2023Updated 2 years ago
- Python Implementation of Assumption Free K-Means Seeding using Markov Chain Monte Carlo☆17Oct 10, 2017Updated 8 years ago
- ☆17May 8, 2024Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 6 years ago
- Offline, CRDT collaboration demo!☆14Aug 14, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rapid Annotation Transfer Tool☆10May 21, 2025Updated last year
- UBC CPSC 330: Applied Machine Learning (2025W1)☆25Dec 9, 2025Updated 5 months ago
- ☆10Sep 29, 2023Updated 2 years ago
- Code for analyzing multi-electrode array recordings (spikes & LFP) for Trujillo, Gao, Negraes et al., 2019.☆16Apr 23, 2020Updated 6 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- プログラミング演習1/実践データサイエンス☆11Updated this week
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 5 years ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- ☆10Sep 11, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Representation of Module Activity☆10May 31, 2017Updated 8 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- ☆20Sep 1, 2018Updated 7 years ago
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- ☆10Oct 21, 2023Updated 2 years ago
- A web tool for exploring large maps of molecular interactions☆11Updated this week
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- Sync crosswords to the reMarkable cloud☆20Feb 1, 2025Updated last year
- nimo☆24Apr 21, 2026Updated last month
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆127Updated this week
- ☆10Nov 5, 2023Updated 2 years ago
- ☆11Apr 25, 2019Updated 7 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 3 years ago