ThierryMondeel / Systems_Biology_FBA_tutorialLinks
Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam
☆14Updated 6 years ago
Alternatives and similar repositories for Systems_Biology_FBA_tutorial
Users that are interested in Systems_Biology_FBA_tutorial are comparing it to the libraries listed below
Sorting:
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆51Updated this week
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆28Updated 2 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆52Updated 6 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆31Updated 2 months ago
- A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples☆21Updated 8 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆26Updated 8 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆42Updated 3 weeks ago
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated last year
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated last week
- ☆51Updated 4 years ago
- De novo peptide sequencing for DDA and DIA by deep learning☆36Updated 4 years ago
- ☆80Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆29Updated 3 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Updated 8 years ago
- HLA-I ligand predictor☆43Updated 2 weeks ago
- Tool for deep mutational scanning experiments.☆54Updated 6 months ago
- Absolute quantification package based on quantms.io☆16Updated 2 weeks ago
- ☆15Updated 5 years ago