Alternatives and similar repositories for Systems_Biology_FBA_tutorial

Users that are interested in Systems_Biology_FBA_tutorial are comparing it to the libraries listed below

• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆20Updated 3 years ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 9 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated 3 weeks ago
• evanpeikon / Evaluating_ML_Biology
  A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples
  ☆21Updated 10 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆53Updated 2 months ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆32Updated 4 months ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆50Updated 2 years ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆33Updated 4 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆54Updated 6 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆43Updated 2 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 3 years ago
• uci-cbcl / HLA-bind
  Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
  ☆26Updated 8 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated last month
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆28Updated 8 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• nh2tran / DeepNovo-DIA
  De novo peptide sequencing for DDA and DIA by deep learning
  ☆39Updated 5 years ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆30Updated 3 years ago
• etirouthier / keras_dna
  ☆26Updated 4 years ago
• SBRG / iModulonMiner
  Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
  ☆23Updated last year
• JanZrimec / DeepExpression
  ☆33Updated 3 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 3 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago
• IBPA / DeepPep
  Deep proteome inference from peptide profiles
  ☆13Updated 5 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated 2 weeks ago
• baoilleach / BioinformaticsPracticals
  Practical Introduction to Bioinformatics and Systems Biology with R (mainly)
  ☆20Updated 15 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 2 months ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆55Updated 8 months ago