Chaowu88 / freeflux
☆12Updated 3 months ago
Alternatives and similar repositories for freeflux:
Users that are interested in freeflux are comparing it to the libraries listed below
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- ☆11Updated last month
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- D3.js based visualizations of cobrapy metabolic models☆45Updated 4 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆39Updated 3 weeks ago
- A python toolbox for 13C metabolic flux analysis☆19Updated 4 months ago
- Enzyme-constrained genome-scale models in python☆25Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated 4 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆68Updated 3 months ago
- A Universal Modeling Language for Metabolic Flux Analysis☆10Updated last month
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 4 months ago
- ☆10Updated last year
- The consensus GEM for Saccharomyces cerevisiae☆98Updated 2 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆39Updated this week
- ☆24Updated 2 weeks ago
- Scripts to perform active learning as described in the referenced article.☆12Updated 11 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- The BiGG Models website server☆81Updated 5 years ago
- cameo - computer aided metabolic engineering & optimization☆114Updated 2 years ago
- ☆11Updated 2 weeks ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 8 months ago
- Metabolic Engineering Workbench☆38Updated 7 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆54Updated last year
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 2 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 5 months ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆26Updated 2 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated this week
- Computation of Microbial Ecosystems in Time and Space☆21Updated 2 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆59Updated last month
- General low-level API☆49Updated 2 years ago