A tutorial on cobrapy
☆10Nov 23, 2022Updated 3 years ago
Alternatives and similar repositories for cobrapy-tutorial
Users that are interested in cobrapy-tutorial are comparing it to the libraries listed below
Sorting:
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆26Jul 12, 2022Updated 3 years ago
- ☆18Aug 29, 2025Updated 6 months ago
- Tool for estimating growth rates from microbial growth curves☆31Feb 4, 2026Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆81Mar 10, 2026Updated last week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Jan 11, 2019Updated 7 years ago
- ☆13Mar 12, 2025Updated last year
- Model predictive control (MPC) for fermentations☆12Feb 28, 2019Updated 7 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- R package for fitting kinetic models with one or more state variables to chemical degradation data☆12Nov 28, 2025Updated 3 months ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 6 years ago
- ☆10Sep 29, 2023Updated 2 years ago
- Mechanistic models in fermentation☆22Aug 30, 2022Updated 3 years ago
- ☆24Oct 19, 2023Updated 2 years ago
- プログラミング演習1/実践データサイエンス☆11Mar 8, 2026Updated 2 weeks ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- Time-sensitive Intermittent Computing Meets Legacy Software☆14Dec 2, 2022Updated 3 years ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆23Mar 29, 2021Updated 4 years ago
- Framework for Object Oriented Modelling of Bioprocesses☆17Feb 18, 2021Updated 5 years ago
- nimo☆21Mar 11, 2026Updated last week
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 6 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆16Mar 12, 2026Updated last week
- ☆10Oct 21, 2023Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- 微分方程式総まとめ☆14Dec 10, 2020Updated 5 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆22Jun 3, 2023Updated 2 years ago
- Berkeley Analog Generator☆16Apr 3, 2019Updated 6 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Sep 20, 2024Updated last year
- REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies☆18Feb 13, 2026Updated last month
- 代谢网络模型构建和使用实操☆32Mar 18, 2023Updated 3 years ago
- A container for all enzyme constrained models created by GECKO.☆16Jul 4, 2022Updated 3 years ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆30Jun 21, 2022Updated 3 years ago
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆32Mar 19, 2023Updated 3 years ago
- ☆26May 24, 2024Updated last year
- ☆44Jun 11, 2025Updated 9 months ago
- ☆39Updated this week
- Python 3 implementation of Jinbo Xu's paper "Distance-based protein folding powered by deep learning", PNAS August 20, 2019 116 (34)☆20Aug 2, 2022Updated 3 years ago
- PythonによるシングルセルRNA-seq解析。☆22Dec 16, 2022Updated 3 years ago
- PINNs-Demo☆13Jun 2, 2022Updated 3 years ago
- Python package for modelling enzyme reactions using Monte carlo sampling from parameter distributions☆32Jul 15, 2025Updated 8 months ago