fumiomatsuda / mfapyLinks
A python toolbox for 13C metabolic flux analysis
☆23Updated 2 months ago
Alternatives and similar repositories for mfapy
Users that are interested in mfapy are comparing it to the libraries listed below
Sorting:
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated 3 weeks ago
- ☆25Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆119Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated this week
- The consensus GEM for Saccharomyces cerevisiae☆112Updated last week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 3 weeks ago
- The generic genome-scale metabolic model of Homo sapiens☆122Updated 2 weeks ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆41Updated 2 months ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- Symbolic Kinetic Models with Python☆32Updated 3 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- WebLogo 3: Sequence Logos redrawn☆152Updated 4 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated 3 weeks ago
- Release of the whole cell E. coli model.☆70Updated 9 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated last week
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 6 months ago
- The BiGG Models website server☆83Updated 5 years ago
- Efficient random sampling for COBRA models☆14Updated 3 years ago
- Draw RNA secondary structures in python.☆48Updated 3 months ago
- Comprehensive Python client for the Uniprot REST API☆50Updated 3 months ago
- Chromosome polymer simulations and in silico capture experiments☆51Updated 2 months ago
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 2 months ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 2 months ago
- nucleic acid folding☆103Updated last month
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Python framework for Systems Biology modeling☆185Updated 2 months ago