A python toolbox for 13C metabolic flux analysis
☆23Jul 7, 2025Updated 7 months ago
Alternatives and similar repositories for mfapy
Users that are interested in mfapy are comparing it to the libraries listed below
Sorting:
- ☆15Oct 29, 2025Updated 4 months ago
- ☆16Jul 22, 2024Updated last year
- A collection of M models downloaded from published studies☆16Feb 18, 2016Updated 10 years ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- Open source genome-scale metabolic models of human and model animals☆25Feb 11, 2026Updated 3 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- The consensus GEM for Saccharomyces cerevisiae☆115Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Mar 13, 2023Updated 2 years ago
- ☆26Sep 28, 2021Updated 4 years ago
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- Metal Activity Heuristic of Metalloprotein and Enzymatic Sites (MAHOMES) - Predicts if a protein bound metal ion is enzymatic or non-enzy…☆11Apr 19, 2022Updated 3 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Jan 11, 2019Updated 7 years ago
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 5 years ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆15Updated this week
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Dec 2, 2024Updated last year
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Sep 3, 2024Updated last year
- POOL (Peptide Optimization with Optimal Learning): code for "Discovering de novo peptide substrates for enzymes using machine learning"☆10Oct 18, 2018Updated 7 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- Real time estimation of epidemic Effective Reproduction Number for Luxembourg☆12Oct 24, 2022Updated 3 years ago
- ☆13Dec 20, 2024Updated last year
- Goslin is the Grammar on succinct lipid nomenclature.☆12Nov 20, 2025Updated 3 months ago
- refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).☆16Feb 26, 2026Updated last week
- ☆10Sep 25, 2019Updated 6 years ago
- Model selection for PEtab☆14Dec 16, 2025Updated 2 months ago
- Single sample pathway analysis tools for omics data☆13Nov 9, 2024Updated last year
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11May 16, 2023Updated 2 years ago
- Sample selection using Kennard-Stone algorighm☆11Jul 15, 2019Updated 6 years ago
- Docker container for bioinformatics tools and pipelines☆15Oct 11, 2024Updated last year
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆10Sep 26, 2019Updated 6 years ago
- ☆14Apr 19, 2020Updated 5 years ago
- 基于vite + vue3 + bin-ui-next + bin-datav的数据可视化大屏框架☆15May 14, 2024Updated last year
- rMSI processing methods using C++☆11Dec 3, 2021Updated 4 years ago
- Cyclic Causal Inference☆13Jan 12, 2024Updated 2 years ago
- This project is designed to find the potential modifications in bacterial genomes.☆15Nov 6, 2024Updated last year
- Collection of resources from each meetup event☆13Nov 26, 2020Updated 5 years ago
- A competition about learning, or otherwise developing, the best controller (agent) for a version of Super Mario Bros.☆32Aug 31, 2009Updated 16 years ago
- DualAQD: Dual Accuracy-quality-driven Prediction Intervals. IEEE TNNLS 2023.☆11Sep 25, 2025Updated 5 months ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆10Apr 22, 2021Updated 4 years ago