fumiomatsuda / mfapy
A python toolbox for 13C metabolic flux analysis
☆20Updated 6 months ago
Alternatives and similar repositories for mfapy:
Users that are interested in mfapy are comparing it to the libraries listed below
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 6 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 5 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆39Updated last month
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 7 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated last year
- ReFramed: metabolic modeling package☆58Updated 7 months ago
- The generic genome-scale metabolic model of Homo sapiens☆107Updated 2 weeks ago
- The consensus GEM for Saccharomyces cerevisiae☆101Updated 3 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆51Updated 3 weeks ago
- cameo - computer aided metabolic engineering & optimization☆115Updated 2 years ago
- Symbolic Kinetic Models with Python☆31Updated last week
- Efficient random sampling for COBRA models☆13Updated 3 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 2 weeks ago
- A Python framework for structural systems biology☆107Updated 4 years ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆28Updated 2 years ago
- Community-curated tutorials and datasets for ML in proteomics☆50Updated 4 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆107Updated 2 months ago
- The BiGG Models website server☆81Updated 5 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Reconstruction algorithms for Python☆24Updated 5 months ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 3 weeks ago
- memote – the genome-scale metabolic model test suite☆131Updated last year
- Repository of tutorials for The COBRA Toolbox☆21Updated last week
- ☆22Updated 2 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Evolutionary velocity with protein language models☆89Updated last year