fumiomatsuda / mfapyLinks
A python toolbox for 13C metabolic flux analysis
☆23Updated 7 months ago
Alternatives and similar repositories for mfapy
Users that are interested in mfapy are comparing it to the libraries listed below
Sorting:
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆47Updated last month
- D3.js based visualizations of cobrapy metabolic models☆50Updated 5 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆80Updated this week
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆43Updated 7 months ago
- ☆26Updated 3 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 7 months ago
- Symbolic Kinetic Models with Python☆34Updated 8 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 7 years ago
- The generic genome-scale metabolic model of Homo sapiens☆126Updated this week
- The consensus GEM for Saccharomyces cerevisiae☆115Updated 2 months ago
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- Release of the whole cell E. coli model.☆76Updated last year
- cameo - computer aided metabolic engineering & optimization☆124Updated 3 years ago
- A Python framework for structural systems biology☆109Updated 5 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆13Updated 11 months ago
- memote – the genome-scale metabolic model test suite☆144Updated 5 months ago
- WebLogo 3: Sequence Logos redrawn☆154Updated 2 weeks ago
- Create force-directed graphs of RNA secondary structures.☆110Updated 5 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Community-curated tutorials and datasets for ML in proteomics☆57Updated 3 months ago
- framed: a metabolic modeling package for python☆26Updated 6 years ago
- The BiGG Models website server☆88Updated 6 years ago
- Python Environment for Modeling and Simulating Biological Systems☆131Updated 2 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆62Updated last month
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆121Updated 3 weeks ago
- A 3-Dimensional View of Human Metabolism and Disease☆31Updated 7 years ago
- Enzyme-constrained genome-scale models in python☆34Updated 2 years ago
- ReFramed: metabolic modeling package☆63Updated 4 months ago