A python toolbox for 13C metabolic flux analysis
☆25Jul 7, 2025Updated last year
Alternatives and similar repositories for mfapy
Users that are interested in mfapy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16May 8, 2026Updated 5 months ago
- Exchangeable data format for training Scientific Machine Learning (SciML) models☆12Updated this week
- A collection of M models downloaded from published studies☆18Feb 18, 2016Updated 10 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Oct 8, 2026Updated 3 weeks ago
- A compact metabolic model of Escherichia Coli core and biosynthetic metabolism☆14Mar 17, 2026Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- some code for linlog model simulation☆10Sep 16, 2021Updated 5 years ago
- memote – the genome-scale metabolic model test suite☆152Aug 14, 2025Updated last year
- Tools for reproducing meta-analysis 🛠☆10Feb 2, 2024Updated 2 years ago
- Curation and analysis of metabolic models☆37Oct 31, 2026Updated last week
- A repository for the R, Python, and Javascript notebooks and files associated with the ODSC West 2021 tutorial -- Visualizing and Analyzi…☆11Nov 17, 2021Updated 4 years ago
- Open source genome-scale metabolic models of human and model animals☆28Updated this week
- ☆21Aug 29, 2025Updated last year
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Jan 21, 2021Updated 5 years ago
- Galaxy tools for metabolomics maintained by Workflow4Metabolomics☆34Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RetroPath2.0 to pathways☆18Jan 28, 2026Updated 9 months ago
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 4 years ago
- GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes☆12Oct 17, 2026Updated 3 weeks ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 3 years ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated 5 months ago
- A project to illustrate the power of Jax for simulating astrochemical kinetics.☆11Oct 12, 2026Updated 3 weeks ago
- REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models …☆10Oct 11, 2022Updated 4 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆14Updated this week
- Single sample pathway analysis tools for omics data☆16Nov 9, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Aug 4, 2026Updated 3 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆30Sep 3, 2024Updated 2 years ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆11Aug 22, 2026Updated 2 months ago
- D3.js based visualizations of cobrapy metabolic models☆56Mar 10, 2020Updated 6 years ago
- ☆27Dec 9, 2022Updated 3 years ago
- ☆13May 6, 2017Updated 9 years ago
- Code for paper "Human-in-the-Loop Assisted de Novo Molecular Design".☆23Mar 17, 2023Updated 3 years ago
- The consensus GEM for Saccharomyces cerevisiae☆137Updated this week
- Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)☆21Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian Nonparametric Learning☆10May 18, 2019Updated 7 years ago
- Deep Learning method for novel virus detection in sequencing data☆10Mar 19, 2025Updated last year
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 4 years ago
- framed: a metabolic modeling package for python☆25Nov 7, 2019Updated 7 years ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆18Jan 30, 2025Updated last year
- JAX-compatible, simplex method-based linear program solver☆12May 24, 2026Updated 5 months ago
- Implementing LRP (Layer-wise Relevance Propagation) for a sequence-to-sequence model with GRU layers.☆12Sep 8, 2023Updated 3 years ago