Alternatives and similar repositories for ParTI:

Users that are interested in ParTI are comparing it to the libraries listed below

• alberlab / igm
  Integrated Genome Modeling
  ☆11Updated last year
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆11Updated 2 months ago
• BorgwardtLab / networkGWAS
  Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …
  ☆14Updated last year
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 7 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 2 years ago
• biswapriyamisra / metabolomics
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Updated 4 years ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 2 months ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 4 months ago
• COMBINE-lab / pyroe
  ☆16Updated last week
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 years ago
• cole-trapnell-lab / cicero
  ☆12Updated 11 months ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated last year
• jbloomlab / dmslogo
  draw sequence logos tailored to deep mutational scanning (DMS) data
  ☆12Updated last year
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆20Updated last year
• knutdrand / bionumpy
  ☆9Updated 7 months ago
• emiraldi / infTRN_lassoStARS
  Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
  ☆15Updated 2 years ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆17Updated 4 months ago
• mohimanilab / MetaMiner
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Updated 3 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆31Updated 7 months ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 3 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated last year
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated last year
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆20Updated 4 years ago
• dbcls / AOE
  AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works
  ☆11Updated 2 years ago