Alternatives and similar repositories for ParTI

Users that are interested in ParTI are comparing it to the libraries listed below

• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• goodarzilab / pypage
  python implementation of the PAGE algorithm
  ☆18Updated last year
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 11 months ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆22Updated 2 years ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 7 months ago
• paulsengroup / modle
  High-performance stochastic modeling of DNA loop extrusion interactions
  ☆18Updated 3 weeks ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated 2 years ago
• erhard-lab / grandR
  R package for nucleotide conversion sequencing data analysis
  ☆16Updated last week
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆36Updated last month
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆26Updated 9 months ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 11 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆41Updated 2 months ago
• matsengrp / phippery
  ☆18Updated last year
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 4 years ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆66Updated 4 years ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆32Updated last year
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• b2jia / jie
  A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
  ☆18Updated 2 years ago
• pachterlab / LSCHWCP_2023
  Identification of viral RdRPs in single-cell RNA sequencing data
  ☆13Updated 5 months ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆38Updated 3 years ago
• paulsengroup / hictkpy
  Python bindings for hictk: read and write .cool and .hic files directly from Python
  ☆16Updated last week
• greenelab / ccc
  ☆23Updated last year
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆41Updated 3 years ago
• songlab-cal / scquint
  ☆18Updated last year
• jbloomlab / dmslogo
  draw sequence logos tailored to deep mutational scanning (DMS) data
  ☆12Updated 2 years ago
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 5 years ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated last year